G559013


Basic Information

Item Value
gene id G559013
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90881452 ~ 90883328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU633851
gggctctggtctatagtagtgcactatatagggaatagggctctggtctatagtagtgcactatatagggaatagggctctggtctatagtagtgcgctatatagggaatagggctctggtctatagtagtgcactatatagggaatagggctctggtctatagtagtgcgctatatagggaatagggctctggtctatagtagtgaactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtgcactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctagtctatagtagtgcactatatagggaatagggctctggtctatagtagtgcactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaataggactctggtctatagtagtgtactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtgtactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaataggactctggtctatagtagtaccactatatagggaatagggccctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatatggatctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctaaagtagtaccactatatagggctctggtctatagtagtaccactatatagggaatagggtgccaattcaGATGCAGCTTGTTACTCCTGTTTAGTGTTGAGAAGAGTTTCCATAACAACAGACTTAACTTTATGAAAGACTTAAAAGGGCTAAAATCCATTTGATTGATTTGACCTGCCGGTCTAACGTTGTgttaatgtgttgttgttgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU633851 True 1430 lncRNA 0.42 2 90881452 90883328

Neighbor

gene id symbol gene type direction distance location
LOC110506998 LOC106562604 coding upstream 65759 90798020 ~ 90815693 (+)
LOC110506219 LOC106562554 coding upstream 100639 90759492 ~ 90780813 (+)
LOC110527007 pex16 coding upstream 154430 90714625 ~ 90727022 (+)
LOC110526798 cars coding upstream 182923 90675515 ~ 90698529 (+)
LOC110506992 LOC106562470 coding upstream 438786 90441506 ~ 90442666 (+)
LOC118964967 NA coding downstream 18705 90902033 ~ 90903249 (+)
LOC118964968 tmod3 coding downstream 97396 90980724 ~ 91023428 (+)
LOC110518689 leo1 coding downstream 159206 91042534 ~ 91063779 (+)
LOC110526812 LOC106587736 coding downstream 286841 91170169 ~ 91196357 (+)
LOC110526813 LOC106587896 coding downstream 356606 91239934 ~ 91242169 (+)
G559011 NA non-coding upstream 8396 90872729 ~ 90873056 (+)
G559010 NA non-coding upstream 10243 90870692 ~ 90871209 (+)
G558986 NA non-coding upstream 95279 90785876 ~ 90786173 (+)
G558925 NA non-coding upstream 106929 90770738 ~ 90774523 (+)
G559020 NA non-coding downstream 15373 90898701 ~ 90899194 (+)
G559022 NA non-coding downstream 27636 90910964 ~ 90911396 (+)
G559023 NA non-coding downstream 36429 90919757 ~ 90960113 (+)
G559025 NA non-coding downstream 44959 90928287 ~ 90928814 (+)
LOC110526809 LOC106562822 non-coding downstream 46634 90838122 ~ 90932867 (+)
G558624 LOC106562471 other upstream 433596 90446102 ~ 90447856 (+)
LOC118964965 LOC106562863 other upstream 456620 90417861 ~ 90424832 (+)
LOC118964964 LOC106562578 other upstream 555192 90324347 ~ 90329324 (+)
G558568 NA other upstream 576985 90301409 ~ 90304467 (+)
G559027 NA other downstream 53589 90936917 ~ 90938074 (+)
G559047 NA other downstream 107458 90990786 ~ 90992088 (+)
LOC110511547 pde8a other downstream 607189 91490509 ~ 91699286 (+)
LOC110517107 LOC106587912 other downstream 892449 91764066 ~ 91789867 (+)

Expression


Co-expression Network