G559047


Basic Information

Item Value
gene id G559047
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 90990786 ~ 90992088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU633888
aaatggtcttcacacagttcacaacgagccaggcggcccaaactgctgcatataccctgactctgctgcgtataccccgactctgctgcgtataccctgactctgctacatataccctgactctgctgcgtataccccgactctgctgcgtataccccgactctgctacatataccccgactctgctgcgtataccccgactctgctacatataccccgactctgctgcgtataccccgactctgctgcgtataccccgactctgct
>TU633890
gactctgctacatataccctgactctgctgcgtataccctgactctgctacATATACCCGACTCTGCTgcgtataccccgactctgctacatataccctgactctgctgcgtataccccgactctgctgcgtataccctgactctgctacatataccctgactctgctgcgtataccctgactctgctgcgtataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccccgactctgct
>TU633891
gactctgctacatataccctgactctgctgcgtataccctgactctgctacATATACCCGACTCTGCTgcgtataccccgactctgctacatataccctgactctgctgcgtataccccgactctgctgcgtataccctgactctgctacatataccctgactctgctgcgtataccccgactctgctgcgtataccccgactctgctacatataccccgactctgctgcgtataccccgactctgctacatataccccgactctgctgcgtataccccgactctgctgcgtataccccgactctgct
>TU633889
tgctgcgtataccctgactctgctacatataccctgactctgctgcatataccctgactctgctgcgtataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccctgactctgctgcatataccccgactctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU633888 False 267 TUCP 0.55 3 90990786 90991510
TU633890 False 328 lncRNA 0.52 3 90991084 90992088
TU633891 False 308 lncRNA 0.54 2 90991084 90991510
TU633889 True 204 lncRNA 0.51 2 90991547 90992088

Neighbor

gene id symbol gene type direction distance location
LOC110526809 LOC106562822 coding upstream 58217 90838122 ~ 90932867 (+)
LOC118964967 NA coding upstream 87835 90902033 ~ 90903249 (+)
LOC110506998 LOC106562604 coding upstream 175391 90798020 ~ 90815693 (+)
LOC110506219 LOC106562554 coding upstream 210271 90759492 ~ 90780813 (+)
LOC110527007 pex16 coding upstream 264062 90714625 ~ 90727022 (+)
LOC110518689 leo1 coding downstream 50446 91042534 ~ 91063779 (+)
LOC110526812 LOC106587736 coding downstream 178081 91170169 ~ 91196357 (+)
LOC110526813 LOC106587896 coding downstream 247846 91239934 ~ 91242169 (+)
LOC110514654 LOC106587893 coding downstream 301571 91293659 ~ 91343222 (+)
LOC110509505 gatm coding downstream 444114 91436202 ~ 91456724 (+)
G559045 NA non-coding upstream 4045 90986736 ~ 90987039 (+)
G559044 NA non-coding upstream 5446 90984947 ~ 90985638 (+)
G559037 NA non-coding upstream 23236 90963007 ~ 90967848 (+)
G559030 NA non-coding upstream 50364 90938996 ~ 90940720 (+)
G559057 NA non-coding downstream 20391 91012479 ~ 91012898 (+)
G559059 NA non-coding downstream 22202 91014290 ~ 91016695 (+)
G559003 NA non-coding downstream 32397 91024485 ~ 91026349 (+)
G559002 NA non-coding downstream 34470 91026558 ~ 91084303 (+)
G559199 NA non-coding downstream 102393 91094481 ~ 91094780 (+)
G559027 NA other upstream 53010 90936917 ~ 90938074 (+)
G558624 LOC106562471 other upstream 543228 90446102 ~ 90447856 (+)
LOC118964965 LOC106562863 other upstream 566252 90417861 ~ 90424832 (+)
LOC110511547 pde8a other downstream 498429 91490509 ~ 91699286 (+)
LOC110517107 LOC106587912 other downstream 783689 91764066 ~ 91789867 (+)
LOC118964972 NA other downstream 978079 91970091 ~ 91973388 (+)
LOC110526817 tipin other downstream 1056075 92048098 ~ 92066565 (+)
G559023 NA non-coding upstream 30673 90919757 ~ 90960113 (+)

Expression


Co-expression Network