XLOC_002471


Basic Information

Item Value
gene id XLOC_002471
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 30306 ~ 30830 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005953
TGTTGTTTGCGCGTCCGCTGCTGGAGGGTCAGTGCAGGGCAGTGCTGGAGCACAGGGCCTGTCTGGAGGAGCTGGAGGCCCCGGGGTCCCTGAGGGTCACTGCAGGAATGTGTGTGTCTGAGGAGGAACAACACACACCTGTACAACACTGACCAACCACTGAGAACACTTCAGtaatgcgtgtgtgtatgtgtgcgcgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagatgggTGGTGTTCTCCGCTGCAGGGTTCAGAGGTCATCAGTGTGTGTTGGAGGAGGGTGACTACAGCGACTGCACTCGTCTGTTCAGCAGGACTGATCTCTCCATCCGCTCACTGCGCTTCCTCAACACCGTCAGTGCCTCatcggcacacacacacacacacacacacacacagagacctgTTTCTGCTGTTCCCATTCaccttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccgcaGGATTTCCTGGAGCCATCGGTGTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005953 True 525 lncRNA 0.56 1 30306 30830

Neighbor

gene id symbol gene type direction distance location
XLOC_002472 CABZ01064670.1 coding upstream 2071 32901 ~ 45486 (-)
XLOC_002473 NA coding upstream 18021 48851 ~ 51974 (-)
XLOC_002474 hlcs coding upstream 22757 53587 ~ 57270 (-)
XLOC_002475 dyrk1aa coding upstream 31539 62369 ~ 76367 (-)
XLOC_002476 ttc3 coding upstream 51067 81897 ~ 108952 (-)
XLOC_002480 NA non-coding upstream 149033 179863 ~ 180704 (-)
XLOC_002487 CABZ01049604.1 non-coding upstream 309082 339912 ~ 340027 (-)
XLOC_002488 NA non-coding upstream 323263 354093 ~ 354657 (-)

Expression


Co-expression Network