XLOC_002472 (CABZ01064670.1)


Basic Information

Item Value
gene id XLOC_002472
gene name CABZ01064670.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32901 ~ 45486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004633
GTCAGGTCTACTGTTATAGAGCATAACATTAAACATATAACATTTCAACAATATTTATCGTAACATTTGAGTGAAATCGCATTATTTGTGATGCCTTTATACAGTATTACCCTGCTGATCTGTTTTCAGATGAAACTAACTGTGGCCTATTCTCAGTGCAGAGCACGAGGAGCTGCTCTCCCTCAGCGTCGACGCtgcagcgccctctgctgtttacAGGTGCACACACTAATTGTGTTCAGGTGTGAACTATCAGCgccgctgtgtgtgtgcgtgtgcgtgtgtgtttactgAGGCTGCTGTAAAacacttcatcatcatcatcagacacacactcatgatCCAGAACAGGCTGAGACAGGCTGAGGCTGATGGATCCACATGTACCTGTAGTGTTCCTGAAGATGGTGCAGATCAAACACCTGGAAAAGCAGCAGCACAGTGTTCTGGCAGCACCGGAGGGCATGAGGGTGTCTCCGCAGCCCCCCGCGCCCCCACAGCGCCCCCTGCGCACACACTCCCGCTCCAGACCAGCCGGACagcgcacacacatactctcaGCAGCACTGTGGAGCCGCCCGGGGGCCGgtcacagcgcacacacacacaATCTGCTGAAGATGGAAGTGAAGCCATAGACATCAATGCCAAAGAGCTGTTGGAGGAGAAGCGACGCTACGATCTCTCCTGCCCCCCTGTGGTGACCTACGGCACGTACCGAGGCCTGAGGGAAGCAAGAAAACCAAAGAAGAAGCATAGCATCGAGCTTCATTCCCCCATATGTGAAGGAGACGAGCCTGCACACCCCGAGCAGACCTGCTGTTTCACTGTAAACACCATGAGCACGGACCTGCAGGAGAGTCCCAGTGTGCTAAACCAGAGCTCTCCTCCATGGACACAGCAGATGGAGGACGTGTTGTTGACTCAGGGGGTTTTACTAGCCCAGGATCCCACTGTTGAATCTCCAGCACTCCCTCATCCCACATACTCAAACTGGTCCATTACCTGTGTAGAGATGGAACCAGTCTACACACTCCCTCAAGCAGAACCAAGACCACCCAAACACCTGGTGTACACCCAACAGGAGCATCTTGATCTGAACGCTGCGCCAGAGACCCAATCAAACACACAATCAGCCTCCAACACACACCGTCCACACACCGCTCACACTCCAGAACCCGAGCAGAACAGTGCGGAGGTGTGTGTAGTTGCAGACAGGACTGATGATCGGCAGGAGTCTGATCCCGAGCCAGTGGAGCGGCAGGCTGGGGTGGAGGAACAGCTCCTGCGGGAGGAGTCTAGACTGATGGTGGACGGCATCTTGGCCAGCGCTCTCTCCGCTCTGCAGGAGATGGAGGATTCAGAGCGAGGTGTCCTGCTGACCGTCGAGCTTACCTCAGAGTCAGGTCTGATGGAGGATAACAGAGCTGCAGATGCAGAGCTGCAGTGCGGCGTGGATCCATCCGGCCGGACTGCGTCTGATGTACTGGAGCCACCAGCAGGTGCTCTGGGAGACTGCAGCCGCTCCCTGCCTTCCTCCGGGTACGAGTCCATCGCCGGCTCCGACTCCGACATCAGGGGTTTTGTGTGCGCAGCATCTGAAGTGTGTTCTGCTCCTGCTGCGGTCAGCTCCCAGAGCCAGAATCCGGCCCGTGTTGATTATTCCTGTGAAGGGAAGAGTGCGGATCCTGCTGAGATCAGATCAGTCCACAGCCCTGCCTCATCAGAGGAGTCTCTCTTTCAGGAGAAGCATGCGGCTGATGTTTGCGTGTGTACAGACAGCAGTGTGAATACGTCTCAGGATACAGCCACGGAGCATGTGTTGAGCAATAACTGTGGACACTCTCCGCACGGTGCTGCAATATCAGCGGATCAGGAGCGTCTTCAGCAAAGCCAATCTCTCAGTGACAGCGACAGCCACAGCTTCACCTCTGATTCAGGTGTGGTGTCAGAACTCAGAGCACCAGCCGTACACAGCCATGAATCCATGGAGCCTGAAGCCCCTTATTCAGGTGAGCAGGAGCTCTGTTACTCTCAGGCCGCAGCAGATCTGAGTGTCCTGCTTTCTGGCACTGAACCCCAGTGTTCTGCAGTCCAGCCCGGGTCTCCGCCATGGGTCTCGGTGCGAGCGGTCTGCTACAGCATCACCGATGACCAGAGCCCGAGTCCAGAGGAGCATCTAAACCCTGCAGATGCAGGAATGTGTGTTTCAGCTCTGGATTCCCTGAACGCCTCTATCAGATCTGCTGCTGTTCCTCTGTTTCTGGATCCAGACCTGCAGCCGGACGGAGGCTTCTCCATCATCAGTGAGGAGGACGAGGGTGATGTGGTGTTCGTCAATGACCTGGGGGCTCTGCACAGTCCTAGTGCACGCCGGGCTAAAGCGTACCCCTTCTGCCTGTCCCCCATATATGAGGAGGAGTGTGTGCGCGAGGAGGCCCCGGGCCCCCAGGAGCCCCAGGAGGAGCAGAGGAGCGTGGAGCAGCCGGCCGCCGCCATACTCTCCCTCCTGCAGTCCGTCAGCGAGAAACTGCAGTCCAGCATGGACAGAGGATCAGGGGAGACCTGGAGGATGGAGCACTGCACACGGAGCCCACAGGACCACCAGGAGGACGTGCGGGTACTGCTAAACCATCATATCCACCAGGAGGACACGGAAGCGCTACTGAGTCACCAGCTCTGCCAGGAGGACACAGGAGCACCACTGATCCTCCAGGTCCTCCCCGAGCCCATCGCTGACCCGTCTGATGATCACAGCACAGACAGAGAGCAGCAGGAGCCGGATGCAGATGTTGGAAAGAGTGCCAACACACCCTTCTATCAGTACATGAAATCTGGACTGATGCCGTCTGCTGATGACCACACCACAGCCGCTGTTCATCCCAGCATAGCCAACACAGGGGTCACGGTGAGCAGGGTCAGAGCATTAGTCTGGTTTGAGATTGGCTTGTATACGTGTAGATGA
>TCONS_00005954
ACACATTAAAGcaaaatataatatgatttacaaacttcatttgttttaaagcaggggtctcagaCTCCATTCCTGGAGGCAGTAGCTCTCGACACTTTAGCTCTAACCATCTCCAGCTCACACTTGCTTAATAGTGtccagtagtcttgaacaccttgattatttgatcagctgtgtttgatttaaggttggagcaaaactgtgaagagctgcggccctccaggagtccAGTTTGGAACCTGTGCTTCAAAGCTTTTCCCCAACACACAGGACAGATCACGCCTGCagttctccatgatggacgtccagcactctccagcctccggcgcaggactttcagcagtgaagattaaaccacactgaactgaacttcagctctgaacacTGGACTTCACTAGAACTTGTATCttaagtggctttgacacaatctatattgtagaagtgttacacacacacacacacacacacacacacacacatatatatgtatgaacTGAATCTGACATGACGAGCGCGCCTCAGTCACTGAACACACGGTGGCGCTACTGCAGCAGAAATCACAGACACGCTAAACAGACGCTAAACATGCATTCAGGAGTTAGTGTTGGGTAATTAACTGTATTAATATCCACACTAAAGTCTGACTATAGCTGGACTAGCTGTAGCGTTAACTGACAACACAATGAGAAGATCCTCAGTTCAGTATGGCGGTAATACAGCAGTACAGCACTGTACAGTCCATATCTGCTGTGAAGCTGACACGAATCCCGGTAAATGTTGGTGTTTTACAGCTTTATTAATCAACTCGACCCTTCATGTGTGTCAATCATCATCAGTGCTCACTGTTGACACAATACCGCCGCTGTTGGAGCTCTGCTGGCTGTTTATTGACAGTGTGGGTGAGCTGATAGTGTTCGCTGTAAACACTGTCCGGTTACTCAGATGTTCCTGCGGGGATCAGGACTGAAGCTCCTCCCAGACAAACTTCCTCAAACTCGGGcagacctcacacacacactcacacacacacacacacacggccgaATGACGAGCAGATAAGAGTTAAACAGCGAGCTTTGCGGATTCTCCCCCCGCTGGATGAGGCTCGGGGGTCGGCAGGATGTCCTGGACCGAGGCCTTCAGGAGCATTTCCAGGTTATTCTCCCGGAGTAGACCAGCGGACAGCGCGGACTCGGAGAGACAGGCTGAGGCTGATGGATCCACATGTACCTGTAGTGTTCCTGAAGATGGTGCAGATCAAACACCTGGAAAAGCAGCAGCACAGTGTTCTGGCAGCACCGGAGGGCATGAGGGTGTCTCCGCAGCCCCCCGCGCCCCCACAGCGCCCCCTGCGCACACACTCCCGCTCCAGACCAGCCGGACagcgcacacacatactctcaGCAGCACTGTGGAGCCGCCCGGGGGCCGgtcacagcgcacacacacacaGGGCTGGACAGTGAAACTGAAATCCTGC
>TCONS_00005735
GGCCTATTCTCAGTGCAGAGCACGAGGAGCTGCTCTCCCTCAGCGTCGACGCtgcagcgccctctgctgtttacAGGTGCACACACTAATTGTGTTCAGGTGTGAACTATCAGCgccgctgtgtgtgtgcgtgtgcgtgtgtgtttactgAGGCTGCTGTAAAacacttcatcatcatcatcagacacacactcatgatCCAGAACAGGCTGAGGTGAGTAAACTGCTGTTAGTGGAGGTTTGCTGTGTGTAAACGCGGTCTCTGGAGAGCTTCTGCTGTTCGGCGGCATTAGAGGAGCCATTCATTATGAGGGAAAGCCAGACTGCTGCACccgcACAGGCTGAGGCTGATGGATCCACATGTACCTGTAGTGTTCCTGAAGATGGTGCAGATCAAACACCTGGAAAAGCAGCAGCACAGTGTTCTGGCAGCACCGGAGGGCATGAGGGTGTCTCCGCAGCCCCCCGCGCCCCCACAGCGCCCCCTGCGCACACACTCCCGCTCCAGACCAGCCGGACagcgcacacacatactctcaGCAGCACTGTGGAGCCGCCCGGGGGCCGgtcacagcgcacacacacacagtgagtcaTCTGCCTTATCAGACGCCGGCATgagtgtgctttaaatgtgctttatgggGACGCTAGTGTGTTTAATATGAGGGGGGGTAACTCAGTAAATATGCCTGATCAGGTTTATGAGGACACTGCCCACATCCCATAATGAACATGAGCAGAAATCTGAGGAAAGAGGAGCCTGTAAACCACAtatacagcagtgtgtgtgtgtgtgtgtgtgtgtgagagactagTTCCTCAGACAGAAgagaaatgaataataaatgatgtGCAATCTTAATTTAATGATTGTCTATGTAAACGAG
>TCONS_00005736
GGCCTATTCTCAGTGCAGAGCACGAGGAGCTGCTCTCCCTCAGCGTCGACGCtgcagcgccctctgctgtttacAGGTGCACACACTAATTGTGTTCAGGTGTGAACTATCAGCgccgctgtgtgtgtgcgtgtgcgtgtgtgtttactgAGGCTGCTGTAAAacacttcatcatcatcatcagacacacactcatgatCCAGAACAGGCTGAGACAGGCTGAGGCTGATGGATCCACATGTACCTGTAGTGTTCCTGAAGATGGTGCAGATCAAACACCTGGAAAAGCAGCAGCACAGTGTTCTGGCAGCACCGGAGGGCATGAGGGTGTCTCCGCAGCCCCCCGCGCCCCCACAGCGCCCCCTGCGCACACACTCCCGCTCCAGACCAGCCGGACagcgcacacacatactctcaGCAGCACTGTGGAGCCGCCCGGGGGCCGgtcacagcgcacacacacacagtgagtcaTCTGCCTTATCAGACGCCGGCATgagtgtgctttaaatgtgctttatgggGACGCTAGTGTGTTTAATATGAGGGGGGGTAACTCAGTAAATATGCCTGATCAGGTTTATGAGGACACTGCCCACATCCCATAATGAACATGAGCAGAAATCTGAGGAAAGAGGAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0016071 mRNA metabolic process biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:1990138 neuron projection extension biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0048588 developmental cell growth biological_process
GO:0048863 stem cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0050793 regulation of developmental process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0048675 axon extension biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0048495 Roundabout binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004633 False 2965 lncRNA 0.56 4 32901 45486
TCONS_00005954 False 1480 lncRNA 0.50 4 38107 42843
TCONS_00005735 False 890 lncRNA 0.52 3 38581 45343
TCONS_00005736 True 640 lncRNA 0.55 3 38709 45343

Neighbor

gene id symbol gene type direction distance location
XLOC_002471 NA coding downstream 2071 30306 ~ 30830 (-)
XLOC_002473 NA coding upstream 3365 48851 ~ 51974 (-)
XLOC_002474 hlcs coding upstream 8101 53587 ~ 57270 (-)
XLOC_002475 dyrk1aa coding upstream 16883 62369 ~ 76367 (-)
XLOC_002476 ttc3 coding upstream 36411 81897 ~ 108952 (-)
XLOC_002477 ripply3 coding upstream 70629 116115 ~ 120580 (-)
XLOC_002480 NA non-coding upstream 134377 179863 ~ 180704 (-)
XLOC_002487 CABZ01049604.1 non-coding upstream 294426 339912 ~ 340027 (-)
XLOC_002488 NA non-coding upstream 308607 354093 ~ 354657 (-)
XLOC_002489 NA non-coding upstream 311069 356555 ~ 358707 (-)

Expression


Co-expression Network