Gene
RNA
| Item | Value |
|---|---|
| gene id | G561907 |
| gene name | idh3a |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 94708903 ~ 94710229 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| idh3a | Predicted to enable isocitrate dehydrogenase (NAD+) activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; mesoderm; musculature system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in retinitis pigmentosa 90. Orthologous to human IDH3A (isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha). |
| description |
|---|
| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU638143 | True | 942 | lncRNA | 0.45 | 2 | 94708903 | 94710229 |
94,707,600
94,708,000
94,708,400
94,708,800
94,709,200
94,709,600
94,710,000
94,710,400
94,710,800
94,710,800
94,711,200
94,711,600
94,712,000
94,712,400
94,712,800
94,713,200
94,713,600
94,714,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499808 | LOC106609698 | coding | downstream | 13049 | 94651207 ~ 94695854 (-) |
| LOC110527030 | LOC106609696 | coding | downstream | 90610 | 94579252 ~ 94618293 (-) |
| LOC118964993 | NA | coding | downstream | 135479 | 94570785 ~ 94573424 (-) |
| LOC110525058 | herc1 | coding | downstream | 142066 | 94324853 ~ 94566837 (-) |
| LOC118964990 | LOC105029587 | coding | downstream | 845791 | 93844809 ~ 94253848 (-) |
| LOC110500983 | trpm1 | coding | upstream | 58928 | 94769157 ~ 94854085 (-) |
| LOC118964995 | NA | coding | upstream | 126209 | 94836438 ~ 94839842 (-) |
| LOC118964997 | NA | coding | upstream | 283458 | 94993687 ~ 94994963 (-) |
| LOC110517419 | LOC106591491 | coding | upstream | 288426 | 94997378 ~ 95172633 (-) |
| LOC110526865 | gtf2a2 | coding | upstream | 470305 | 95180534 ~ 95182874 (-) |
| G561908 | NA | non-coding | downstream | 7821 | 94699948 ~ 94701082 (-) |
| G561904 | NA | non-coding | downstream | 9289 | 94699377 ~ 94699614 (-) |
| G561896 | NA | non-coding | downstream | 28516 | 94679099 ~ 94680387 (-) |
| G561865 | NA | non-coding | downstream | 44575 | 94663849 ~ 94664328 (-) |
| G561886 | NA | non-coding | downstream | 54741 | 94653843 ~ 94654162 (-) |
| G561905 | idh3a | non-coding | upstream | 2449 | 94712678 ~ 94714486 (-) |
| G561918 | NA | non-coding | upstream | 9364 | 94719593 ~ 94720032 (-) |
| G561920 | NA | non-coding | upstream | 17975 | 94728204 ~ 94729954 (-) |
| G561921 | NA | non-coding | upstream | 19026 | 94729255 ~ 94730526 (-) |
| G561928 | NA | non-coding | upstream | 29938 | 94740167 ~ 94741633 (-) |
| G561791 | NA | other | downstream | 371694 | 94336552 ~ 94343200 (-) |
| G561786 | NA | other | downstream | 403469 | 94303980 ~ 94305434 (-) |
| G561730 | NA | other | downstream | 560744 | 94145590 ~ 94148159 (-) |
| G561917 | NA | other | upstream | 7919 | 94718148 ~ 94719474 (-) |
| G561923 | NA | other | upstream | 22602 | 94732831 ~ 94733169 (-) |
| G561939 | NA | other | upstream | 131830 | 94842059 ~ 94843245 (-) |
| G562068 | NA | other | upstream | 590481 | 95300710 ~ 95301575 (-) |
