G563438


Basic Information

Item Value
gene id G563438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 97455861 ~ 97461743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU640521
GAGAAACTCTTGTTACGTAAGACTGTGTTAGAATGAAGACGGTTACTGTAGTGATGGAGacgaggttcaagacactatactgtagagaagaggttcaagacactatactgtagtgaagaggttcaaTACACTATACCgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagacgaggttcaagacactatactgtagtgaagaggttgaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttgaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagagaaGAGGTTCaatacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttgaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttgaagacactatactgtagtgatgtag
>TU640530
GAGAAACTCTTGTTACGTAAGACTGTGTTAGAATGAAGACGGTTACTGTAGTGATGGAGacgaggttcaagacactatactgtagagaagaggttcaagacactatactgtagtgaagaggttcaaTACACTATACCgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagacgaggttcaagacactatactgtagtgaagaggttgaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttgaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagacaaggttcaagacactatactgtagtgatggagacGAGgttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagaggttcaagacactatactgtagtgatgtagaggttcaagacactactGTAGTGATGAGGTttaagacactatactgtagtgatggaga
>TU640534
GAGAAACTCTTGTTACGTAAGACTGTGTTAGAATGAAGACGGTTACTGTAGTGATGGAGacgaggttcaagacactatactgtagagaagaggttcaagacactatactgtagtgaagaggttcaaTACACTATACCgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagacgaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaatacactatactgtagagaAGAGGTTCaatacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcatgacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagaggttcaagacactactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagaca
>TU640538
GAGAAACTCTTGTTACGTAAGACTGTGTTAGAATGAAGACGGTTACTGTAGTGATGGAGacgaggttcaagacactatactgtagagaagaggttcaagacactatactgtagtgaagaggttcaaTACACTATACCgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagacgaggttcaagacactatactgtagagaaGAGgttcaagacactatactgtagtgatggagacGAGgttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagaggttcaagacactatactgtagtgatgtagaggttcaagacactactGTAGTGATGAGGTttaagacactatactgtagtgatggaga
>TU640526
cactatactgtagtggagaggttcaagacactatactgtagtgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttgaagacactatactgtagtgatgtag
>TU640533
tactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatggagaggttcaagacactatactgtagtgatgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactactgtagtgatgtagaggttcaagacacta
>TU640535
tactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatggagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgaagaggttcaagacactatactgtagtgatgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatggagag
>TU640522
atactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgaaggggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatgtagaggttcaagacactatactgtagtgaagaggttcaagacactatactgtagtgatggagaggttcaagacactatactgtagtgatgtagaggttcaagacactactGTAGTGATGAGGTttaagacactatactgtagtgatggaga

Function

NR:

description
PREDICTED: putative proline-rich protein 21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU640521 False 817 lncRNA 0.39 7 97455861 97459794
TU640530 False 635 lncRNA 0.40 4 97455861 97461263
TU640534 False 647 lncRNA 0.40 5 97455861 97461743
TU640538 False 956 lncRNA 0.40 7 97455861 97461263
TU640526 False 251 lncRNA 0.39 2 97456172 97459794
TU640533 False 237 lncRNA 0.40 2 97458109 97459088
TU640535 False 356 lncRNA 0.39 3 97458109 97459501
TU640522 True 395 lncRNA 0.39 3 97459514 97461263
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965002 NA coding upstream 103001 97350492 ~ 97353435 (+)
LOC110507008 LOC106588037 coding upstream 441593 96997013 ~ 97014268 (+)
LOC110514610 LOC106591035 coding upstream 1063963 96323229 ~ 96392558 (+)
LOC118965000 LOC106593614 coding upstream 1442961 95996318 ~ 96012900 (+)
LOC110510618 bat1 coding upstream 1485364 95900120 ~ 95970508 (+)
LOC110513174 LOC106588022 coding downstream 74791 97536534 ~ 97670291 (+)
LOC118936669 NA coding downstream 218174 97679917 ~ 97796621 (+)
plekhg4 LOC106594058 coding downstream 335916 97797659 ~ 97943775 (+)
LOC118965004 NA coding downstream 482513 97944256 ~ 97947528 (+)
LOC118965006 NA coding downstream 742628 98204371 ~ 98206233 (+)
G563436 NA non-coding upstream 9027 97445781 ~ 97446834 (+)
G563419 NA non-coding upstream 70003 97385038 ~ 97385858 (+)
G563416 NA non-coding upstream 75729 97379736 ~ 97380132 (+)
G563415 NA non-coding upstream 77543 97377627 ~ 97378318 (+)
G563439 NA non-coding downstream 1473 97463216 ~ 97463854 (+)
G563445 NA non-coding downstream 19722 97481465 ~ 97483833 (+)
G563448 NA non-coding downstream 28227 97489970 ~ 97491168 (+)
G563456 NA non-coding downstream 46923 97508666 ~ 97509938 (+)
G563404 NA non-coding downstream 71096 97532839 ~ 97534369 (+)
G562740 NA other upstream 968636 96481834 ~ 96487225 (+)
G562719 NA other upstream 1067921 96384736 ~ 96387940 (+)
G562296 NA other upstream 1681135 95772739 ~ 95774726 (+)
LOC110516620 LOC106562854 other downstream 46546 97369711 ~ 97529904 (+)
G563588 NA other downstream 460888 97922631 ~ 97923034 (+)
G563596 NA other downstream 488330 97950073 ~ 97951916 (+)
G564164 NA other downstream 1018837 98480580 ~ 98483302 (+)

Expression

G563438 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

G563438 Expression in each Bioproject

Bar chart with 17 bars.
G563438 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network