G564218


Basic Information

Item Value
gene id G564218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 98436101 ~ 98437102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU641719
AGACAGCCTTGCCCTGGACAGGCAGAGTGGGTGCTGGGGCTGTCCTGACAGAGTATAGACAGCAGGCGAGGCAGAGGGCAGCCAACACCAGGACAGCAGGCACACAGAAGAACCACAGCCTCTCCACTAGTAAGGTGACCCCCAGCCAGGCCACCACGGTCGGGGCCGCGCTGACGTGGGACGCCAGGACCTTCTTCATGGCCCCTCCAACAAACGCAGACATCACCCCCATGTAGATCCAGTCTATGTAGTCTTCCATTGGCTGGAAGGAAGCACGAGCAGAGGGAGTTGAGTTGTCTCAGTTCCTCTCAGTTCTCAGCACTgcaactctgtctgtctgtctctctctctctatctctctgtctttctatctctctctctgtgctgctgtgTGTCCCTCTCTAAATGTGTGGTGTCAGATCAGAGAGTAACAGAGTGGTTGAAGGAAAGCCAGTGCAGTACagactcagctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctcactctttcactctctttctctctctctttcactctctctctttctc
>TU641720
AGACAGCCTTGCCCTGGACAGGCAGAGTGGGTGCTGGGGCTGTCCTGACAGAGTATAGACAGCAGGCGAGGCAGAGGGCAGCCAACACCAGGACAGCAGGCACACAGAAGAACCACAGCCTCTCCACTAGTAAGGTGACCCCCAGCCAGGCCACCACGGTCGGGGCCGCGCTGACGTGGGACGCCAGGACCTTCTTCATGGCCCCTCCAACAAACGCAGACATCACCCCCATGTAGATCCAGTCTATGTAGTCTTCCATTGGCTGGAAGGAAGCACGAGCAGAGGGAGTTGAGTTGTCTCAGTTCCTCTCAGTTCTCAGCACTgcaactctgtctgtctgtctctctctctctatctctctgtctttctatctctctctctgtgctgctgtgTGTCCCTCTCTAAATGTGTGGTGTCAGATCAGAGAGTAACAGAGTGGTTGAAGGAAAGCCAGTGCAGTACagactcagctctctctctctctctctctctctctctctctctctctctctgtgtctctctctctgtgtctctctctctctctctctgtctctctctctctctctcactctttcactctctttctctctctctttcactctctctctttctc
>TU641721
AGACAGCCTTGCCCTGGACAGGCAGAGTGGGTGCTGGGGCTGTCCTGACAGAGTATAGACAGCAGGCGAGGCAGAGGGCAGCCAACACCAGGACAGCAGGCACACAGAAGAACCACAGCCTCTCCACTAGTAAGGTGACCCCCAGCCAGGCCACCACGGTCGGGGCCGCGCTGACGTGGGACGCCAGGACCTTCTTCATGGCCCCTCCAACAAACGCAGACATCACCCCCATGTAGATCCAGTCTATGTAGTCTTCCATTGGCTGGAAGGAAGCACGAGCAGAGGGAGTTGAGTTGTCTCAGTTCCTCTCAGTTCTCAGCACTgcaactctgtctgtctgtctctctctctctatctctctgtctttctatctctctctctgtgctgctgtgTGTCCCTCTCTAAATGTGTGGTGTCAGATCAGAGAGTAACAGAGTGGTTGAAGGAAAGCCAGTGCAGTACagactcagctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgactctctctctgtctctctctctctctctcactctttcactctctttctctctctctttcactctctctctttctc

Function

NR:

description
hydroxysteroid 11-beta dehydrogenase 2, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU641719 False 587 lncRNA 0.54 3 98436101 98437102
TU641720 False 613 lncRNA 0.54 2 98436101 98437102
TU641721 True 613 lncRNA 0.54 2 98436101 98437102
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965092 NA coding downstream 113302 98322299 ~ 98322799 (-)
LOC118965005 zdhhc1 coding downstream 226005 98154767 ~ 98210096 (-)
tppp3 LOC106588035 coding downstream 338644 98089574 ~ 98130946 (-)
LOC110511555 abcc12 coding downstream 1088349 97224999 ~ 97347752 (-)
LOC110507011 LOC106588039 coding downstream 1438296 96993129 ~ 96997805 (-)
LOC110512666 LOC106588021 coding upstream 98536 98535638 ~ 98552338 (-)
LOC110515682 LOC106588135 coding upstream 150219 98587321 ~ 98591194 (-)
LOC110489520 rbhce1 coding upstream 605646 99042748 ~ 99055198 (-)
LOC110489522 rbhce1 coding upstream 605648 99042750 ~ 99044382 (-)
LOC118965010 LOC106593375 coding upstream 1042670 99479712 ~ 99526615 (-)
G564217 NA non-coding downstream 1314 98434236 ~ 98434787 (-)
G564202 NA non-coding downstream 32718 98392856 ~ 98403383 (-)
G564136 NA non-coding downstream 61147 98374738 ~ 98374954 (-)
G564130 NA non-coding downstream 65122 98370743 ~ 98370979 (-)
G564123 NA non-coding downstream 71744 98364096 ~ 98364357 (-)
G564250 NA non-coding upstream 40123 98477225 ~ 98478951 (-)
G564251 NA non-coding upstream 45115 98482217 ~ 98484179 (-)
G564253 NA non-coding upstream 47096 98484198 ~ 98484746 (-)
G564258 NA non-coding upstream 67623 98504725 ~ 98505131 (-)
G564265 NA non-coding upstream 86430 98523532 ~ 98525245 (-)
G563824 NA other downstream 690598 97744923 ~ 97745503 (-)
G563391 NA other downstream 1126875 97308463 ~ 97309226 (-)
G563273 NA other downstream 1472703 96962764 ~ 96963398 (-)
G564259 NA other upstream 68418 98505520 ~ 98506228 (-)
G564389 LOC105025469 other upstream 286088 98723190 ~ 98727274 (-)
G565083 NA other upstream 520532 98957634 ~ 98958241 (-)
G565105 NA other upstream 562713 98999815 ~ 99000410 (-)
G565147 NA other upstream 660814 99097916 ~ 99099999 (-)

Expression

G564218 Expression in all Baseline Samples

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G564218 Expression in each Bioproject

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G564218 Expression in each Sample
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Co-expression Network