XLOC_002478 (KCNJ6)


Basic Information

Item Value
gene id XLOC_002478
gene name KCNJ6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 124995 ~ 135432 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004646
GCTCAGAATCTTCCAGAAGTCCAGATGGAGCAGGATGTCGAGAGCACCGTCACGGTTCGACAACCCAAGCTGCCCAAGCAGGCGCGGGACGACATCCCCAAACCGCTGCAGGAGCGGGAGCGCGCCAAGCAGAAGACCCAGCGCTACGTCCGCAAAGACGGCAAGTGCAACGTGCACCACGGAAACGTGCGGGAGACCTACCGCTACCTGACGGACATCTTCACCACGCTGGTGGACCTCAAGTGGAGGTTCAACCTGTTCATCTTCGTGCTGGTCTACACCGTCACCTGGCTGTTCTTCGGCTTCATGTGGTGGCTGATCGCCTACATTCGAGGAGATCTGGAGCACATCGGAGACAACCAGTGGACTCCCTGCGTCAACAACCTGAACGGCTTCGTGTCCGCATTCCTGTTCTCGATAGAGACTGAGACCACCATCGGCTACGGCCACCGCGTCATCACCGACAAGTGTCCGGAGGGCATCGTGCTGCTGCTGGTGCAGTCGGTGCTGGGCTCCATCGTCAACGCCTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAAGAAGCGCGCCGAGACGCTGGTCTTCTCCACCAACGCCGTCATCTCCATGCGGGACGGCCGGCTCTGCCTGATGTTCCGCGTGGGAGACCTCAGAAACTCGCACATCGTGGAGGCGTCCATTAGAGCCAAGCTGATCAAGTCCAAACAGACCAAGGAGGGCGAGTTCATCCCGCTCAATCAGACGGACATAAACGTGGGCTACGACACCGGAGACGACCGGCTCTTCCTGGTGTCTCCGCTCATCATCTGCCACGAGATCAACCAGCACAGCCCCTTCTGGGAGATCTCCAGAGAGCACATGGCCAAGGAGGAGCTGGAGATCGTGGTGATCCTGGAGGGCATGGTGGAGGCCACAGGCATGACGTGTCAGGCGCGCAGCTCATACGTGGCCAGCGAGATCAAGTGGGGTTACCGCTTCACGCCAGTGCTGACGCTGGAGGACGGCTTCTACGAGGTGGACTACAACAGCTTCCACGAGATCTACGAGACCAACACGCCCAGCTGCAGCGCGCGAGAGCTGGCCGAGATGACGGCGCGCGCCCGCCTGCCGCTCACCTGGTCGGTGGCCAGCAAACTGAGCCAGCTGGAGCCGCAGGAGCCGCCGGAGGAGCTGACGGAGAGGAACGGAGACGTCGCCAACATGGAGAGCGAGTCCAAAGTGTAG

Function

symbol description
kcnj6 Human ortholog(s) of this gene implicated in alcohol use disorder and heroin dependence. Orthologous to human KCNJ6 (potassium inwardly rectifying channel subfamily J member 6).

GO: NA

KEGG:

id description
ko04929 GnRH secretion
ko04915 Estrogen signaling pathway
ko04921 Oxytocin signaling pathway
ko04727 GABAergic synapse
ko04725 Cholinergic synapse
ko04728 Dopaminergic synapse
ko04726 Serotonergic synapse
ko04723 Retrograde endocannabinoid signaling
ko04713 Circadian entrainment
ko05032 Morphine addiction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-120327-2 Human ortholog(s) of this gene implicated in alcohol use disorder and heroin dependence. Orthologous to human KCNJ6 (potassium inwardly rectifying channel subfamily J member 6).

Ensembl:

ensembl_id ENSDARG00000058985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004646 True 1233 mRNA 0.61 2 124995 135432

Neighbor

gene id symbol gene type direction distance location
XLOC_002477 ripply3 coding downstream 4415 116115 ~ 120580 (-)
XLOC_002476 ttc3 coding downstream 16043 81897 ~ 108952 (-)
XLOC_002475 dyrk1aa coding downstream 48628 62369 ~ 76367 (-)
XLOC_002474 hlcs coding downstream 67725 53587 ~ 57270 (-)
XLOC_002473 NA coding downstream 73021 48851 ~ 51974 (-)
XLOC_002479 erg coding upstream 26228 161660 ~ 175562 (-)
XLOC_002480 NA coding upstream 44431 179863 ~ 180704 (-)
XLOC_002481 psmg1 coding upstream 71564 206996 ~ 210703 (-)
XLOC_002482 klhl35 coding upstream 101025 236457 ~ 244745 (-)
XLOC_002483 emsy coding upstream 148871 284303 ~ 302827 (-)
XLOC_002472 CABZ01064670.1 non-coding downstream 79509 32901 ~ 45486 (-)
XLOC_002471 NA non-coding downstream 94165 30306 ~ 30830 (-)
XLOC_002487 CABZ01049604.1 non-coding upstream 204480 339912 ~ 340027 (-)
XLOC_002488 NA non-coding upstream 218661 354093 ~ 354657 (-)
XLOC_002489 NA non-coding upstream 221123 356555 ~ 358707 (-)
XLOC_002491 NA non-coding upstream 280565 415997 ~ 421653 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000203_00138806_00154529 KCNJ9, KCNJ6 coding CI01000203 null 138561 ~ 154554 (-)
bowfin (Amia calva) AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding CM030121.1 CM030121.1 50815722 ~ 50838107 (-)