Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_024783 (CU651671.1)

Basic Information

Item	Value
gene id	XLOC_024783
gene name	CU651671.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007136.7
NCBI id	CM002909.2
chromosome length	37502051
location	31678079 ~ 31678193 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048845
aaccacagccatgtcaccctgcagcctagACCGGTTGCTCACTGCTGCTAAGCTGCGCTGAGTCTgattagtacctggatgggagaccacatggaaaactaggctgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116686

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00048845	True	115	rRNA	0.54	1	31678079	31678193

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_024781	lamb1a	coding	downstream	48984	31546828 ~ 31629095 (-)
XLOC_024780	NA	coding	downstream	174610	31500307 ~ 31503469 (-)
XLOC_024779	zgc:172145	coding	downstream	244567	31424850 ~ 31433512 (-)
XLOC_024778	myod1	coding	downstream	254586	31421253 ~ 31423493 (-)
XLOC_024777	prr33	coding	downstream	281600	31388899 ~ 31396479 (-)
XLOC_024784	acot19	coding	upstream	36142	31714335 ~ 31739309 (-)
XLOC_024785	ubl7a	coding	upstream	65458	31743651 ~ 31763897 (-)
XLOC_024786	scamp5a	coding	upstream	159035	31837228 ~ 31863374 (-)
XLOC_024787	si:ch73-330k17.3	coding	upstream	212063	31890256 ~ 31907672 (-)
XLOC_024788	duox2	coding	upstream	265972	31944165 ~ 31953516 (-)
XLOC_024776	CU462909.1	non-coding	downstream	359951	31318012 ~ 31318128 (-)
XLOC_024773	dre-mir-135a	non-coding	downstream	633872	31044110 ~ 31044207 (-)
XLOC_024772	CR753816.1	non-coding	downstream	838816	30839147 ~ 30839263 (-)
XLOC_024765	NA	non-coding	downstream	2123863	29549404 ~ 29554216 (-)
XLOC_024789	CR847962.1	non-coding	upstream	342688	32020881 ~ 32020995 (-)
XLOC_024794	NA	non-coding	upstream	840206	32518399 ~ 32530868 (-)
XLOC_024798	NA	non-coding	upstream	1326034	33004227 ~ 33007045 (-)
XLOC_024799	NA	non-coding	upstream	1508680	33186873 ~ 33202190 (-)
XLOC_024801	NA	non-coding	upstream	1756219	33434412 ~ 33435148 (-)

Expression

Co-expression Network