G564527


Basic Information

Item Value
gene id G564527
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 99141877 ~ 99142510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU642173
CGACATTCCAACCTTGGAGTTTTCAAAAGTTCTGGGAGTTTATTTGGTTTGTTAAACTGTACAGTAAACTCTTaagtgtaaaatagtaaataatggctacttctcagagatGATTAAACTGTCGAGAGGAGAAAAACAAGGTTGTCCGCattcggcatatctatttattatggccatcgaaatgttagctattaaaatcagatccagcAGATGTATCAAGGGCCTAGAAATCCTGGgcttaaaaaaaatgtgtcattgtacgctgatgattcatgttttttttcaatCCACAatatagtagtgtgatatacagtagtagtgtgatatacagtagtagtgtgatatacagtagtagtgtgatatagtagtgtgatatacagtagtagtgtgacatacagtagtagtgtgatatagtggggtgatatagtagtgtgatatacagtagtagtgtgatatacagtagtagtgtgacatacagtagtagtgtgatatacagtagtagtgtgatatagtagtgtgatatacagtagtagtgtgatatagtagtgtgatatagtag

Function

NR:

description
reverse transcriptase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU642173 True 559 lncRNA 0.35 2 99141877 99142510

Neighbor

gene id symbol gene type direction distance location
LOC118965009 NA coding upstream 39646 99099322 ~ 99102231 (+)
LOC110526852 NA coding upstream 128214 99012670 ~ 99013663 (+)
LOC110526849 vps13c coding upstream 132621 98789830 ~ 99009256 (+)
LOC118965008 NA coding upstream 323110 98816363 ~ 98818767 (+)
LOC110525057 LOC106592677 coding upstream 353579 98786714 ~ 98788594 (+)
LOC110526853 LOC105021099 coding downstream 99057 99241567 ~ 99314530 (+)
LOC110514875 anx2a coding downstream 198237 99340747 ~ 99357939 (+)
p24b p24b coding downstream 263943 99406453 ~ 99412263 (+)
LOC110498619 LOC105016647 coding downstream 282176 99424686 ~ 99469650 (+)
LOC110513770 LOC106588105 coding downstream 474246 99616756 ~ 99663639 (+)
G564517 NA non-coding upstream 34152 99104628 ~ 99107725 (+)
G564516 NA non-coding upstream 39839 99101238 ~ 99102038 (+)
G564505 NA non-coding upstream 61625 99076254 ~ 99080252 (+)
G564496 NA non-coding upstream 120146 99021437 ~ 99021731 (+)
G564492 NA non-coding upstream 124718 99015733 ~ 99017159 (+)
G564539 NA non-coding downstream 27532 99170042 ~ 99170269 (+)
G564540 NA non-coding downstream 27873 99170383 ~ 99170681 (+)
G564550 NA non-coding downstream 55143 99197653 ~ 99197969 (+)
G564555 NA non-coding downstream 59171 99201681 ~ 99202958 (+)
G564560 NA non-coding downstream 67331 99209841 ~ 99210237 (+)
G564500 NA other upstream 73280 99067907 ~ 99068597 (+)
G564164 NA other upstream 658575 98480580 ~ 98483302 (+)
G563596 NA other upstream 1189961 97950073 ~ 97951916 (+)
G563588 NA other upstream 1218843 97922631 ~ 97923034 (+)
G564667 NA other downstream 394510 99537020 ~ 99539242 (+)
G564805 NA other downstream 666329 99808839 ~ 99809932 (+)
G564904 NA other downstream 902517 100045027 ~ 100047090 (+)

Expression

G564527 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

G564527 Expression in each Bioproject

Bar chart with 17 bars.
G564527 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network