Fish Transcriptome and Expression Database

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model fish

XLOC_024789 (CR847962.1)

Basic Information

Item	Value
gene id	XLOC_024789
gene name	CR847962.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007136.7
NCBI id	CM002909.2
chromosome length	37502051
location	32020881 ~ 32020995 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048855
GCCGggagctagctctctgcaactctcacatggtcacccgcTGAAGCAAAGCAGGGCTGTGCCGGGTCAGTTCCTAGATGGGAGACtacatggaaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113535

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00048855	True	115	rRNA	0.57	1	32020881	32020995

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_024788	duox2	coding	downstream	67365	31944165 ~ 31953516 (-)
XLOC_024787	si:ch73-330k17.3	coding	downstream	113209	31890256 ~ 31907672 (-)
XLOC_024786	scamp5a	coding	downstream	157507	31837228 ~ 31863374 (-)
XLOC_024785	ubl7a	coding	downstream	256984	31743651 ~ 31763897 (-)
XLOC_024784	acot19	coding	downstream	281572	31714335 ~ 31739309 (-)
XLOC_024790	zgc:101540	coding	upstream	273724	32294719 ~ 32311056 (-)
XLOC_024791	cep152	coding	upstream	294324	32315319 ~ 32363351 (-)
XLOC_024792	cops2	coding	upstream	345076	32366071 ~ 32381663 (-)
XLOC_024793	atp8b4	coding	upstream	383943	32404938 ~ 32464149 (-)
XLOC_024794	NA	coding	upstream	497404	32518399 ~ 32530868 (-)
XLOC_024783	CU651671.1	non-coding	downstream	342688	31678079 ~ 31678193 (-)
XLOC_024780	NA	non-coding	downstream	517412	31500307 ~ 31503469 (-)
XLOC_024776	CU462909.1	non-coding	downstream	702753	31318012 ~ 31318128 (-)
XLOC_024773	dre-mir-135a	non-coding	downstream	976674	31044110 ~ 31044207 (-)
XLOC_024772	CR753816.1	non-coding	downstream	1181618	30839147 ~ 30839263 (-)
XLOC_024798	NA	non-coding	upstream	983232	33004227 ~ 33007045 (-)
XLOC_024799	NA	non-coding	upstream	1165878	33186873 ~ 33202190 (-)
XLOC_024801	NA	non-coding	upstream	1413417	33434412 ~ 33435148 (-)
XLOC_024802	NA	non-coding	upstream	1729804	33750799 ~ 33762426 (-)

Expression

Co-expression Network