XLOC_002479 (erg)


Basic Information

Item Value
gene id XLOC_002479
gene name erg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 161660 ~ 175562 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004647
ATGACGGCGTCTGCAGCCGCTGAGCTCCCTCACAGTAAACTCCTGCTGTCTGCTGTCTCTGTCAAGCTGGAGGCCAGCGCTGGAGCACACCGGAGCCACtgcaggtcaCCTCCACATCTGTGTGCTCGTGTCAGAATGAGGAGTGATGGCAGAAACAATGTTGTCTTCAGCAGTGATGGATGTCaggtcagacacacacatgcgTGCCtaGATAGGGATCATCTCAGTTCTGCAGACCCGGGGCAGTGGTCGGCGGGTCACGTGCGGCAGTGGCTGGACTGGGCGGTGCAGGAGTACGGGCTGCCGCCGCTGGACGTGTCTCTGTTTCAGGGTGTGGATGGGAAGCAGCTCTGCAGGATGAGCAGAGAGGAGCTCCAGCGTCTGACCAGCAGCTACTCTGCAGACGTGCTGCTCTCTCACCTGCACTACCTCAGAGAGACTCCACTTCCTCACTTGACTTCAGATGATGTTGACAAAGCCTTGCAAAACTCCCCGCGGTTAATGCATGCTCGCAACACAGGAGGAGCCAACTTCATCTTTCCCAACACACCAGTCTACCCTCCAGACGCCAGCAGAGGAGCCAGCAGagcagATGTGGGTTATGACGCTGTCAGGCGCTCTGGATGGACTCCTGCTCTTCCTGCAGCTAAAGtttctCAGAGCTCTGCCGCCATCATGAGCAAAACTGAAGAGCAGAGAGCGCAGTTAGATCCGTATCAGATTTTAGGGCCGACCAGCAGCAGACTGGCCAACCCAGGCTCTGGTCAGATCCAGCTGTGGCAGTTCCTGCTGGAGCTCCTGTCCGACAGCTGCAACTCGTCCTGCATCACTTGGGAGGGAACCAACGGCGAGTTCAAGATGACGGACCCGGACGAGGTGGCGCGACGCTGGGGCGAGCGGAAGAGCAAGCCCAACATGAACTACGACAAGCTGAGTCGAGCCCTGCGCTACTACTATGACAAGAACATCATGACCAAAGTGCACGGCAAGCGCTACGCCTACAAGTTCGACTTCCATGGCATTGCGCAAGCCTTGCAGCCGCACCCGCCCGACTCCTCCATCTACAAGTACCCTGCGGTGGCGGCGGATCTGCCCTACGTCAGCTCCTACCACCCGCAGAAGATGAGCTTCATGGCTCCTCATCCTCAGGCCATGAGCGTCTCCTCCTCCGGCTTCTTCAGCGGGCCGGCTCCGTACTGGAACACACCAGCGGCAGGGATCTACGGCGGGCCACGGCACCCCCCTGCTCACATGCCCTCACATCTGGGCTCATACTACTAG
>TCONS_00005955
CCCATGCAGTTGGAAAGTAATGTATCTGTGGACAGACGAGACGCTTGTGAGGAGGCGCTGTCGGTGGTGAGTGAGGATCCGTGTGTATCAGAGTGTGTGTACACAGCGGCGTCTCCTCTGAGCGTGCAGATGACGGCGTCTGCAGCCGCTGAGCTCCCTCACAGTAAACTCCTGCTGTCTGCTGTCTCTGTCAAGCTGGAGGCCAGCGCTGGAGCACACCGGAGCCACtgcaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagagaaGCTCCAGTGGCTGATCTTTCCATCTCAGGAGCCCAACAGTTGGTTACCAcatgagagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgatgtggAG
>TCONS_00005956
GGAAGAGGGAGGGGGtggaggaaagagcggaagcattcagTGCTGGAAGTAAGGAGGCGCTGTCGGTGGTGAGTGAGGATCCGTGTGTATCAGAGTGTGTGTACACAGCGGCGTCTCCTCTGAGCGTGCAGATGACGGCGTCTGCAGCCGCTGAGCTCCCTCACAGTAAACTCCTGCTGTCTGCTGTCTCTGTCAAGCTGGAGGCCAGCGCTGGAGCACACCGGAGCCACtgcaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagagaaGCTCCAGTGGCTGATCTTTCCATCTCAGGAGCCCAACAGTTGGTTACCAcatgagagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgatgtggAG
>TCONS_00005957
acacacacacacgcacacacttgcacacacacatctGTATCCTGTCtgcatctgtctgtccgtccattgCACCTGTCTCACCTCGtgtctctctttcacacacacacacacagatactacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgtgtccAGATAAACACTATTGTTGGAGTTGAGCTTATCTCTGCTCTCCTGAATATCCTGTTTCGTGGAGCTGCGCGTCCAGAACCAATAGAAAGCTCTTCCTGCTCAGGCTGACTTCACTTCCAGCTTTAGCACAATCTCATccgctgcaaacacacacacacacacactcactcacacttacacacacacactctagagctGCAGCGCTTGAGGACGGCCTCGTCCCGCTCCGGCATGGCCAGCACCATCAAGGAGGCGCTGTCGGTGGTGAGTGAGGATCCGTGTGTATCAGAGTGTGTGTACACAGCGGCGTCTCCTCTGAGCGTGCAGATGACGGCGTCTGCAGCCGCTGAGCTCCCTCACAGTAAACTCCTGCTGTCTGCTGTCTCTGTCAAGCTGGAGGCCAGCGCTGGAGCACACCGGAGCCACtgcaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagagaaGCTCCAGTGGCTGATCTTTCCATCTCAGGAGCCCAACAGTTGGTTACCAcatgagagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgatgtggAG

Function

symbol description
erg Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and hemangioblast cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; intermediate cell mass of mesoderm; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in myeloid leukemia. Orthologous to human ERG (ETS transcription factor ERG).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko05215 Prostate cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-041212-40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and hemangioblast cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; intermediate cell mass of mesoderm; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in myeloid leukemia. Orthologous to human ERG (ETS transcription factor ERG).

Ensembl:

ensembl_id ENSDARG00000077304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004647 False 1281 mRNA 0.59 11 161660 167782
TCONS_00005955 False 503 lncRNA 0.54 2 167409 169656
TCONS_00005956 False 505 lncRNA 0.55 2 167409 170420
TCONS_00005957 True 882 lncRNA 0.53 2 167409 175562

Neighbor

gene id symbol gene type direction distance location
XLOC_002478 KCNJ6 coding downstream 26228 124995 ~ 135432 (-)
XLOC_002477 ripply3 coding downstream 41080 116115 ~ 120580 (-)
XLOC_002476 ttc3 coding downstream 52708 81897 ~ 108952 (-)
XLOC_002475 dyrk1aa coding downstream 85293 62369 ~ 76367 (-)
XLOC_002474 hlcs coding downstream 104390 53587 ~ 57270 (-)
XLOC_002480 NA coding upstream 4301 179863 ~ 180704 (-)
XLOC_002481 psmg1 coding upstream 31434 206996 ~ 210703 (-)
XLOC_002482 klhl35 coding upstream 60895 236457 ~ 244745 (-)
XLOC_002483 emsy coding upstream 108741 284303 ~ 302827 (-)
XLOC_002484 NHLRC3 coding upstream 129034 304596 ~ 309894 (-)
XLOC_002473 NA non-coding downstream 109686 48851 ~ 51974 (-)
XLOC_002472 CABZ01064670.1 non-coding downstream 116174 32901 ~ 45486 (-)
XLOC_002471 NA non-coding downstream 130830 30306 ~ 30830 (-)
XLOC_002487 CABZ01049604.1 non-coding upstream 164350 339912 ~ 340027 (-)
XLOC_002488 NA non-coding upstream 178531 354093 ~ 354657 (-)
XLOC_002489 NA non-coding upstream 180993 356555 ~ 358707 (-)
XLOC_002491 NA non-coding upstream 240435 415997 ~ 421653 (-)

Expression


Co-expression Network