XLOC_002480


Basic Information

Item Value
gene id XLOC_002480
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 179863 ~ 180704 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005958
CGCGAATGCAGCGGTGCAGTCCGATGCGCGCCCGCGCCTCTCCGTCCGCGCGCTGCACTAACTTAACCAGCTGAACAGCTAACCGGTTAACGAGCTGACCGGCTAACCACCGGAACCGCTGCCCAACCAGCCGATGACGCGTCCAGGCTCTCATGGACCCAGAGTAAACACATCATGGACAGATACAGAGCTTTTTCTTAGAATTAAAATTACCCATCATGCTTTGCGGGTATGTGCATGGAGAATGCTCAGATCTttggtcggcagctgatgcgtgtaaacattCGGACAGCTTTGACACGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005958 True 304 lncRNA 0.55 2 179863 180704

Neighbor

gene id symbol gene type direction distance location
XLOC_002479 erg coding downstream 4301 161660 ~ 175562 (-)
XLOC_002478 KCNJ6 coding downstream 44431 124995 ~ 135432 (-)
XLOC_002477 ripply3 coding downstream 59283 116115 ~ 120580 (-)
XLOC_002476 ttc3 coding downstream 70911 81897 ~ 108952 (-)
XLOC_002475 dyrk1aa coding downstream 103496 62369 ~ 76367 (-)
XLOC_002481 psmg1 coding upstream 26292 206996 ~ 210703 (-)
XLOC_002482 klhl35 coding upstream 55753 236457 ~ 244745 (-)
XLOC_002483 emsy coding upstream 103599 284303 ~ 302827 (-)
XLOC_002484 NHLRC3 coding upstream 123892 304596 ~ 309894 (-)
XLOC_002485 akt2l coding upstream 131018 311722 ~ 322769 (-)
XLOC_002473 NA non-coding downstream 127889 48851 ~ 51974 (-)
XLOC_002472 CABZ01064670.1 non-coding downstream 134377 32901 ~ 45486 (-)
XLOC_002471 NA non-coding downstream 149033 30306 ~ 30830 (-)
XLOC_002487 CABZ01049604.1 non-coding upstream 159208 339912 ~ 340027 (-)
XLOC_002488 NA non-coding upstream 173389 354093 ~ 354657 (-)
XLOC_002489 NA non-coding upstream 175851 356555 ~ 358707 (-)
XLOC_002491 NA non-coding upstream 235293 415997 ~ 421653 (-)
XLOC_002492 NA non-coding upstream 365498 546202 ~ 548201 (-)

Expression


Co-expression Network