XLOC_024806 (foxb1a)


Basic Information

Item Value
gene id XLOC_024806
gene name foxb1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34154171 ~ 34156152 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048870
CTCTTAGTCATATcaagaacgagagagagagagagagtgagtgtgtgcgaGAGAGAGGGGATCTGGTCCATTCAAGCTGGCCTGGAAAGAAGGAAGACACTTGTTCTTTCTTGAGTTCAAGAAGTGAACTCGCAGGACGTCCGCGTCTCGGCGAAAACAAAACTTGCGAAATACTGAATTTCCCCGACTGACTTTCAACGCGATTAGGACAGGATGCCCAGACCCGGGAGAAACACCTACAGCGATCAGAAACCGCCGTACTCCTACATTTCACTCACCGCCATGGCCATCCAGAGTTGTCCGGAGAAGATGCTCCCTCTCAGCGAGATCTACAAGTTTATCATGGATCGCTTTCCGTACTACCGGGAAAACACCCAGCGCTGGCAGAACTCCCTCCGCCACAACCTCTCCTTCAACGACTGCTTCATTAAAATCCCCCGGCGCCCGGACCAGCCCGGGAAGGGTAGTTTCTGGGCGCTCCATCCCAGCTGCGGAGACATGTTCGAGAACGGAAGTTTCCTGCGACGCCGCAAACGCTTCAAGGTGATGACATCAGAGCACCTGGCACCCAGCAAGCCCTCAGACGCTGCCCACTACCTCCAGCAGCACGCCAAGCTCCGGCTCAGTGCCCTAGGCACACACCTCCCTCAGATGTCCAGCTACAACCTGGGAGTTTCCCAGCCGTCCACGTTCAAGCACCCGTTCGCCATCGAGAACATCATCGCCCGAGAGTACAAAGTTCCCGGAGGACTGGCGTTCTCCACCGGGTACCCCCTCCACAACCAGCTGACCACAGCCTGGCCCCATATGTACAGCACTAGTATGATGGACAGCGCGGCTCCCATCTCCATGACAAGCAGCGATTATAGTGCCTACGGTGTGCCCATCAAGTCGCTCTGCCACGGCGGACAAACCTTACCGGCGATCCCCGTCCCGATCAAGCCGACCCCGGCGGCGCTGCCTCACCACATCCCGGCATTCCTATCGAACTCTCCGCAATCTCTGAGCCCGACGTCCCCGCAGACAGCGACCAGCCAAAGCAGCCCGGCCACCCCGAGCGAAACCCTGACGGGACCCGCGACGCTGCAGTCGGTCGCGGTGCACTGACACCTGCGGACTGGGCCTGCCGGTCAGCACCTGTACTCCAAAGTTGAATTTTAATTATAGACCTTGACAGACACTGGCTATACAATCAAGGCAAGAGCTATCTATGTTGCAGTGGTGTTAATTTATGTGTATGTGTTGAGATTTCTAAGTGTTGCTTTTGATGAGTCCAATCACATGGATCGACACGGATATCATATTGTAAAATgaagagtttttgttttgtttttttacaacctAAATATCCAGAATTTATGTGTTTATTCGACAAATCCAAGCACTGCGATCGTGTTTGAATCGCACAAGGCAAGTGCTCGTCGTTTTTCTCGCAGGTTATATCGCCTATTAGATAACTGATAGTACACTGAAACACTATGTGCGTATAAGTCGGAATGCTCACTATTTTTAGGGTTGGTAGTCATGCTACTAACTTTCTAGACGACTAAACTTGTCTCAGTCTGCAAACCAAATACTtgatctaaaacacacacacacacacaaacacacaaacacacacacaagtacagtATGCTACAATTGCAAACTTGAAGTTAAAATAGGATAGGGTCATTAAGTAAATATGTGAATAATTGCAAATAAGTGATATTGAAATTGTGTCAAATGCACTTTTTAGTTAgatgttttacattatattttgcaGGAAATGTTTTGTGAGCGTTTAATTTAAAGCCGTGGTGACCATGTGTATTAAAATGCCGTACATTTGTACTTTTTGTTCAGATATAAAGCATGCCTTTTTCCagactttgtgttgttttgctgCAAGCATGCGTGCTTTTAAAAGATGTGCAAAACGTCTGCATTAAATTACGAACTTGGTCATcagaatattttttcattaaaatggtGTAAACTTA

Function

symbol description
foxb1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within mammillary body development. Predicted to be located in nucleus. Is expressed in several structures, including blastodisc; central nervous system; mesoderm; neural keel; and presumptive structure. Orthologous to human FOXB1 (forkhead box B1).

GO:

id name namespace
GO:0061374 mammillothalamic axonal tract development biological_process
GO:0061379 inferior colliculus development biological_process
GO:0061381 cell migration in diencephalon biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0021855 hypothalamus cell migration biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0008542 visual learning biological_process
GO:0033504 floor plate development biological_process
GO:0007412 axon target recognition biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0021767 mammillary body development biological_process
GO:0022029 telencephalon cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990616-47 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within mammillary body development. Predicted to be located in nucleus. Is expressed in several structures, including blastodisc; central nervous system; mesoderm; neural keel; and presumptive structure. Orthologous to human FOXB1 (forkhead box B1).

Ensembl:

ensembl_id ENSDARG00000089042

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048870 True 1982 mRNA 0.48 1 34154171 34156152

Neighbor

gene id symbol gene type direction distance location
XLOC_024805 NA coding downstream 145687 34007807 ~ 34008484 (-)
XLOC_024804 NA coding downstream 184106 33963179 ~ 33970065 (-)
XLOC_024803 NA coding downstream 201977 33939113 ~ 33952194 (-)
XLOC_024802 NA coding downstream 391745 33750799 ~ 33762426 (-)
XLOC_024801 NA coding downstream 719023 33434412 ~ 33435148 (-)
XLOC_024807 CU914545.1 coding upstream 98993 34255145 ~ 34255273 (-)
XLOC_024808 gcnt3 coding upstream 118539 34274691 ~ 34284144 (-)
XLOC_024809 NA coding upstream 321945 34478097 ~ 34512102 (-)
XLOC_024810 megf8 coding upstream 467595 34623747 ~ 34632050 (-)
XLOC_024811 NA coding upstream 485288 34641440 ~ 34643204 (-)
XLOC_024813 NA non-coding upstream 515916 34672068 ~ 34723976 (-)
XLOC_024816 NA non-coding upstream 777679 34933831 ~ 34938131 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03249062_03251932 FOXB1B, FOXB1, FOXB1.S, FOXB1A coding CI01000330 null 3247867 ~ 3251932 (-)