XLOC_024808 (gcnt3)


Basic Information

Item Value
gene id XLOC_024808
gene name gcnt3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 34274691 ~ 34284144 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048872
TTAAGCACTAGGAGTGTGAGGATTTTCCACTGTACAGTCAAAcagatctTGAGTATAACTCTTTTCGTCCTCGTGATGAACTATCCAGAACAAAGCTGTCTTCCCAAACGGGAGACCAACTTGAATCACCTCCAACAGCAGGATGTGGGAGAACTGCAGGCTTGTTCGGCCATCATCCAAGGAGATATGGACGGAGTGGACAAGGAGAGCTTCAGGAAGCTTCTGGCTTCGAAGAAGCGACCGTCTTTGCTGACCGAGTCCTTTTACCTGAACATAACCACCGACTGTCCAACATACATCGAAGGACGAGGATTTCTGATGGAGGCTCTTAGTAAGGAAGAAGAGGATTTTCCTATCGCCTACTCAATGGTGATCCATGATAAAATCGAGATGTTCGAAAGGCTCCTCAGGGCGATTTACGCTCCTCAAAATGTGTACTGCGTCCACGTGGACATGAAGTCTCCGCAGATCTTTAGAGAAGCCGTGAATGCCATCGTGTCCTGCTTCCCTAATGTGTTTGTGGCCAGCAAATTAGAGAGCGTGATCTACGCCTCCTGGTCTCGAGTTCAAGCGGATGTGAACTGCATGCAGGATCTGCTCAAATCTCCAGTGCAGTGGAGGTATCTGCTGAACACCTGCGGCACGGACTTCCCCATTAAAACCAATGCAGAAACCGTTCGCTCTTTGAAACACCTCAACGGGAAGAATAGTATGGAGTCGGAGACTGTACCAGGGAAAAATTGGCGCTGGCAGTTCCATCACAACATCACGAACACCGTGATCCGGACCGATATCAGAAAGTCGCCTCCACCGATAAACACCTCCATGTTTTCAGGAAATGCGTACTTCGTGGTTTCCAGAGAGTTTGTGGAATACATCATGAACAGCAAAGAGATTCAAAACCTGATGGAGTGGGAGAAAGACACGTACAGTCCTGACGAACACATGTGGGCGACGCTACAGCGGATGCCTTCGGTTCCAGGATCCAACTCTCCCAACAACAAATACGAGCAGTCGGACATGAACGCGATCGCTCGCCTGGTGAAGTGGAGCTACCATGAAGGAGATTTAAACAGCGGCGCTCCGTACCCACCATGCACCGGGATGCACAGACGATCGGTGTGCGTGTACGGTGCCGGAGACCTGAAATGGATTGTGAGGCAACACCATCTTTTAGCGAACAAGTTCGACCCTGAGGTAGATGATGTTGCAATTAAATGCATGGAAGCGTTTTTAAGGTACAAAGCCGAGAATCCAACATTAGCCAGCctataa
>TCONS_00048873
ACACTGAAATCAGCAAAACAAAAGTACATGTATATGTCCACTGTAAAAACAATGTTCAGTGTCTGTAATGTTGAATTCTTGTTTATTTGCGGTTGCGAACTGCATTATAGGATgtcgatctctGCTTGTTCGGCCATCATCCAAGGAGATATGGACGGAGTGGACAAGGAGAGCTTCAGGAAGCTTCTGGCTTCGAAGAAGCGACCGTCTTTGCTGACCGAGTCCTTTTACCTGAACATAACCACCGACTGTCCAACATACATCGAAGGACGAGGATTTCTGATGGAGGCTCTTAGTAAGGAAGAAGAGGATTTTCCTATCGCCTACTCAATGGTGATCCATGATAAAATCGAGATGTTCGAAAGGCTCCTCAGGGCGATTTACGCTCCTCAAAATGTGTACTGCGTCCACGTGGACATGAAGTCTCCGCAGATCTTTAGAGAAGCCGTGAATGCCATCGTGTCCTGCTTCCCTAATGTGTTTGTGGCCAGCAAATTAGAGAGCGTGATCTACGCCTCCTGGTCTCGAGTTCAAGCGGATGTGAACTGCATGCAGGATCTGCTCAAATCTCCAGTGCAGTGGAGGTATCTGCTGAACACCTGCGGCACGGACTTCCCCATTAAAACCAATGCAGAAACCGTTCGCTCTTTGAAACACCTCAACGGGAAGAATAGTATGGAGTCGGAGACTGTACCAGGGAAAAATTGGCGCTGGCAGTTCCATCACAACATCACGAACACCGTGATCCGGACCGATATCAGAAAGTCGCCTCCACCGATAAACACCTCCATGTTTTCAGGAAATGCGTACTTCGTGGTTTCCAGAGAGTTTGTGGAATACATCATGAACAGCAAAGAGATTCAAAACCTGATGGAGTGGGAGAAAGACACGTACAGTCCTGACGAACACATGTGGGCGACGCTACAGCGGATGCCTTCGGTTCCAGGATCCAACTCTCCCAACAACAAATACGAGCAGTCGGACATGAACGCGATCGCTCGCCTGGTGAAGTGGAGCTACCATGAAGGAGATTTAAACAGCGGCGCTCCGTACCCACCATGCACCGGGATGCACAGACGATCGGTGTGCGTGTACGGTGCCGGAGACCTGAAATGGATTGTGAGGCAACACCATCTTTTAGCGAACAAGTTCGACCCTGAGGTAGATGATGTTGCAATTAAATGCATGGAAGCGTTTTTAAGGTACAAAGCCACAGTTGAAAATATCACACACCTAACGTGCACAGTCGCATGA
>TCONS_00048874
TTCCTGCTCCACCGATATGCACCACAGAGGCTGCTTCATACCTCACAGACGCTGGTTTCCTCTGTCTGACAGATGACAATCCTAAATAACTGAACATGGGAATTAACAACCAGAGGACTCTAAAAACAGTCTCCATCCTTTCAGTGAGTATAACTCTTTTCGTCCTCGTGATGAACTATCCAGAACAAAGCTGTCTTCCCAAACGGGAGACCAACTTGAATCACCTCCAACAGCAGGATGTGGGAGAACTGCAGGCTTGTTCGGCCATCATCCAAGGAGATATGGACGGAGTGGACAAGGAGAGCTTCAGGAAGCTTCTGGCTTCGAAGAAGCGACCGTCTTTGCTGACCGAGTCCTTTTACCTGAACATAACCACCGACTGTCCAACATACATCGAAGGACGAGGATTTCTGATGGAGGCTCTTAGTAAGGAAGAAGAGGATTTTCCTATCGCCTACTCAATGGTGATCCATGATAAAATCGAGATGTTCGAAAGGCTCCTCAGGGCGATTTACGCTCCTCAAAATGTGTACTGCGTCCACGTGGACATGAAGTCTCCGCAGATCTTTAGAGAAGCCGTGAATGCCATCGTGTCCTGCTTCCCTAATGTGTTTGTGGCCAGCAAATTAGAGAGCGTGATCTACGCCTCCTGGTCTCGAGTTCAAGCGGATGTGAACTGCATGCAGGATCTGCTCAAATCTCCAGTGCAGTGGAGGTATCTGCTGAACACCTGCGGCACGGACTTCCCCATTAAAACCAATGCAGAAACCGTTCGCTCTTTGAAACACCTCAACGGGAAGAATAGTATGGAGTCGGAGACTGTACCAGGGAAAAATTGGCGCTGGCAGTTCCATCACAACATCACGAACACCGTGATCCGGACCGATATCAGAAAGTCGCCTCCACCGATAAACACCTCCATGTTTTCAGGAAATGCGTACTTCGTGGTTTCCAGAGAGTTTGTGGAATACATCATGAACAGCAAAGAGATTCAAAACCTGATGGAGTGGGAGAAAGACACGTACAGTCCTGACGAACACATGTGGGCGACGCTACAGCGGATGCCTTCGGTTCCAGGATCCAACTCTCCCAACAACAAATACGAGCAGTCGGACATGAACGCGATCGCTCGCCTGGTGAAGTGGAGCTACCATGAAGGAGATTTAAACAGCGGCGCTCCGTACCCACCATGCACCGGGATGCACAGACGATCGGTGTGCGTGTACGGTGCCGGAGACCTGAAATGGATTGTGAGGCAACACCATCTTTTAGCGAACAAGTTCGACCCTGAGGTAGATGATGTTGCAATTAAATGCATGGAAGCGTTTTTAAGGTACAAAGCCGTTTATGGCCGATCGCTGCTGACTGTTAGAaaatcagattttgttttatGA

Function

symbol description
gcnt3 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko00512 Mucin type O-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-110411-253 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type).

Ensembl:

ensembl_id ENSDARG00000060471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048872 False 1275 mRNA 0.49 3 34274691 34284144
TCONS_00048873 False 1254 mRNA 0.48 4 34277253 34281411
TCONS_00048874 True 1394 mRNA 0.49 1 34278687 34280080

Neighbor

gene id symbol gene type direction distance location
XLOC_024807 CU914545.1 coding downstream 19418 34255145 ~ 34255273 (-)
XLOC_024806 foxb1a coding downstream 118539 34154171 ~ 34156152 (-)
XLOC_024805 NA coding downstream 266207 34007807 ~ 34008484 (-)
XLOC_024804 NA coding downstream 304626 33963179 ~ 33970065 (-)
XLOC_024803 NA coding downstream 322497 33939113 ~ 33952194 (-)
XLOC_024809 NA coding upstream 193953 34478097 ~ 34512102 (-)
XLOC_024810 megf8 coding upstream 339603 34623747 ~ 34632050 (-)
XLOC_024811 NA coding upstream 357296 34641440 ~ 34643204 (-)
XLOC_024812 CABZ01080568.1 coding upstream 378214 34662358 ~ 34670413 (-)
XLOC_024813 NA coding upstream 387924 34672068 ~ 34723976 (-)
XLOC_024802 NA non-coding downstream 512265 33750799 ~ 33762426 (-)
XLOC_024816 NA non-coding upstream 649687 34933831 ~ 34938131 (-)
XLOC_024818 NA non-coding upstream 690939 34975083 ~ 34979558 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03363281_03364585 NA coding CI01000330 null 3362999 ~ 3364648 (-)
striped catfish (Pangasianodon hypophthalmus) G210886 NA non-coding NC_047607.1 CM018553.1 13723551 ~ 13726829 (-)
tiger barb (Puntius tetrazona) G168767 LOC107576866,LOC107703296,LOC107739089,LOC107659467,LOC107550217,LOC107703264,LOC107598899,LOC107550207 non-coding NC_056723.1 CM032092.1 11539794 ~ 11541499 (-)
mexican tetra (Astyanax mexicanus) G74368 NA non-coding NC_035904.1 CM008307.1 16797045 ~ 16801051 (-)