LOC110495590 (LOC106574982)


Basic Information

Item Value
gene id LOC110495590
gene name LOC106574982
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61099 ~ 69100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981881.1
gagttggcaatcccaaggatcccggaaTGCACGGACGGTGTTAGCGGGGGAACAGGAAGTTCCAGGCAGGCGCCCACCATTATTCAGTATAAAGAAAGCACCAGAACGATGCAGTCAAGAAGATAAGCTAAGTGTCCTTTTCTATTTATTACTACAGGTATGTAATAGCACGTTTAAACGTTCTGATATCAAAAGAATATGTCATAACATTTTAGGTAATAAGTCCGTTAAGGTATTATCACGTTTGGTAAAGGTTTAATGTGTAATTTTTGTGTCAAACCGAGTGAAGCACATGATAACTAAGTTACATATTTAGAGCCTTTAGGGTTTGTCTGAGTGGATGTACATAATTTTCTCAAGGTCATTTCATAAATAATCTATTTACTTCTGAGATTTCTGAATTCGTGTTGCaaattgtttttttaatgtaaaatTCACGAGCTGGTAAAATGGCGGCGCCACTCGGTTTGCGTCAAcagacttttttttattttattgcaacaataataacattattacacatcaatacagGGACATGTAAAGTCCAGGCAGAGAGACAATTTCACTGTTCCACCACTGTTTTGAAGCTGAATGTAATGATCATCAGTTTTCTACATGTGTACtaatattcagacacattcagttgTTTCTATCTTTATCTATAAATGTTACTATGGTGTGAAAGGGTAATACTATTCGTTTTGATTTAAATAACACAGTGAAGACCAGGTTATTCAGGAAAATACTACATAGTGCTGCCTAAAACAAACGGTAACCTTGTACTAAATGGTTTTTGAGTCATTTATGCATTTGTGAATTCAGGACATCTACTATACATTAAGTGCACTTAAGTTGTGTAGCCTGATTTTAAAGTGTATACATTGTCTAATGGGAATCAGATCTATTGAAATCggatcagtgcttgacttggacaggAGCTCACCAGAGCggagtaccggcacctcaaatttctgtttgagctcatgttcctcttatagaatattagcttaACAGTATTGTAgcgctcctgcacctaaatataaacaatatTTTTTGAGAATAAATTAAGTGCCAGAACTGCCAAGACAATAACTTTTGGGTCCGTTTGTCTTTACTACTACTGGCCGACTCAGATTAAGTCTGAGGCcggtaacatcaacagtgaggacaaacccagcctgcctctctccttctacaCTGAGTTCAAACCTACAGTCACCCagtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagacgatTGGGAAATCTGTTAGTCATGGCCGACTCAGATCAAGTCTGAGGCCGGTAATATCAGCAGTGAGGACAGAcgcagcctgcctctctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtcgagaccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgccaacattaaagatgaagaagaggaggagaagattgggACATCTGTTAATCATGgagaccaTGTTGAGACATTCTCTACATCTATAGAGCAACAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAATTCTATCAAAGCTAAAAATACACCTAAGAATACACAAAGGAGGGAATCTGTATTTCTgcactgactgtgggaagagtttcacaaCATCAAAGGCTATGACAGTTCATCAGagagtacacacaggagagaagccttacttctgctctgactgtggaaataGTTTCTCTCGACGGGGCGACCTAAAAACACacgaacgtatacatacaggagagaagccttactcctgctctgactgtgtaaAATTCTTCACCACATCAGGTGAGCTAAAaattcaccagagaacacacacaggagagaagccatactcctgctctgactgtaggGCGAGGTTCTCTCAACTGAGCCACCTAAAACAGCatgaacgtatacacacaggaaagaagccttactcctgctctgactgtgtaaaatgcttcacaacatcatctgagctaaaagttcatcagagaacacacacaggagagaagccttacttttGCTCTGACTGTAGGGCGAGTTTCTCTCAACTGGGAAACTTAAAACAACACGAACGTGTACACACAGgcgagaagccttactcctgctctgattgtggaaagagtttttcTCGACGGGGCCACTTTAAAACACATGAGCATATACATACAGGAGataagccttactcctgctctgattgtggaaagagtttttcTCGACAGGGCGATCTAAAAatacatgaacgtatacatacaggagagaagccttactcctgctttAATTGTataaaatgcttcacaacatcaggtgagctaaaagttcatcagagaacacacacaggagagaagccatactCCTGCTCTGATTGTAGGGCGAGTTTCTCTCAACTGAGCCACCTAAAACAGCatgaacgtatacacacaggagagaagccttactcctgctctgactgtaggAAGAGTTTCTCTCAATCGAGCCACCTGAAACAGCatgaacgtatacacacaggagagaagtcttactcctgctctgactgtggaaaatgcttcacaacatcatcTGAGCttaaagttcatcagagaacacacacaggagagaagccttacttctgctctgactgtggggcgaGGTTCTCTCAACTGGGAAACTTAAAACaacatgaacgtatacacacaggagagaagccttactcctgctctgactgtggggcgaGTTTCTCTCAACCGTGCAACCTAAAAAATCATaaacgtatacacacaggagagaagccttactcctgctctgactgtagaAAGAGTTTCTCTCAACTGGGCCACTTAAAAAGACACCAAGGTATACATAAAGGAGAGTAGCCTTACTACTGCAATGACAGTTTCCACAGTTTTAAATCATGAGCTGAGCTAAACGATCTTCAAAGAATATACACGGGAGAGTGGCCTTTCTTCTGCTCTTACTGTAGCAAGAACTTCTCCCGATTGGGCAATGTAAAAACACACCAATGGCTACACACTTGAGAGAAGCCTCATCAGTTCTCTCAGACCAGCTGAGATTAGTCACTCCACTTAATTCTTCTCATAAAATAATTTGCAATGTTGAATTGGATCAAATGAAGAATGTGTAGAACACTTTTAGTCCTATTGTTTCTCACTGTGAGAGAACAATGCAGAGAACAGGGAGCATTATGGAATGATCAGTGAGCATCTTGTCAATTTTGCAATTTtgctgacagttgtgaatctgatgcagccgaagagctactgcccctttacctgggaaagcaccgaacaacagacagggatgttggaccatcgaagacGTGCAAATGTGATGAGacctacattgatttggggttcacttatattgggaatAGTACCTTTCCTCAGCCAAAGTGTGTTTATAGCTCACAACTGAAACCTTCACTCTTacgcagacatttagaaaaaaGCATGCCAaattgaaaaataagccacaggagttttttgagcgagaattaagacaactttcgagtagtaagacatgtataaaagcaacagataccattaataagaaggcgctagaagcgtcttatatggtgagctaccgagtggctaggacaggcaagcaccatactattgtggaggacttcattcttcctgcttcCGTGGATATGGCTGGAGGAAAGGCCCAAAAAAACTATACCGCATCGGCGACATGGCAAGAGATGTTTTGATACAATTACTGCTTCGTatatacaagccagtgaattctatgcgttaca
>TU644585
ATAAAGAAAGCACCAGAACGATGCAGTCAAGAAGATAAGCTAAGTGTCCTTTTCACGTTTAAACGTTCTGATATCAAAAGAATATGTCATAACATTTTAGGTAATAAGTCCGTTAAGGTATTATCACGTTTGGTAAAGGTTTAATGTGTAATTTTTGTGTCAAACCGAGTGAAGCACATGATAACTAAGTTACATATTTAGAGCCTTTAGGGTTTGTCTGAGTGGATGTACATAATTTTCTCAAGGTCATTTCATAAATAATCTATTTACTTCTGAGATTTCTGAATTCGTGTTGCaaattgtttttttaatgtaaaatTCACGAGCTGGTAAAATGGCGGCGCCACTCGGTTTGCGTCAAcagacttttttttattttattgcaacaataataacattattacacatcaatacagGGACATGTAAAGTCCAGGCAGAGAGACAATTTCACTGTTCCACCACTGTTTTGAAGCTGAATGTAATGATCATCAGTTTTCTACATGTGTACtaatattcagacacattcagttgTTTCTATCTTTATCTATAAATGTTACTATGGTGTGAAAGGGTAATACTATTCGTTTTGATTTAAATAACACAGTGAAGACCAGGTTATTCAGGAAAATACTACATAGTGCTGCCTAAAACAAACGGTAACCTTGTACTAAATGGTTTTTGAGTCATTTATGCATTTGTGAATTCAGGACATCTACTATACATTAAGTGCACTTAAGTTGTGTAGCCTGATTTTAAAGTGTATACATTGTCTAATGGGAATCAGATCTATTGAAATCggatcagtgcttgacttggacaggAGCTCACCAGAGCggagtaccggcacctcaaatttctgtttgagctcatgttcctcttatagaatattagcttaACAGTATTGTAgcgctcctgcacctaaatataaacaatatTTTTTGAGAATAAATTAAGTGCCAG

Function

NR:

description
PREDICTED: zinc finger protein 2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981881.1 False 3935 mRNA 0.42 3 61099 69100
TU644585 True 960 lncRNA 0.34 2 68026 69012

Neighbor

gene id symbol gene type direction distance location
LOC110497043 LOC106592258 coding downstream 32419 20836 ~ 28680 (-)
LOC118965196 NA coding upstream 5658 74758 ~ 78747 (-)
LOC118965194 LOC106574951 coding upstream 46264 115364 ~ 129260 (-)
LOC110511225 LOC106574981 coding upstream 81689 150789 ~ 167325 (-)
LOC110510711 LOC106575981 coding upstream 119144 188244 ~ 208591 (-)
LOC110519534 LOC106575793 coding upstream 173457 242557 ~ 279418 (-)
G566344 NA non-coding downstream 24715 35991 ~ 36384 (-)
G566357 NA non-coding upstream 12998 82098 ~ 84923 (-)
G566326 NA non-coding upstream 30344 99444 ~ 100066 (-)
G566364 NA non-coding upstream 55751 124851 ~ 125568 (-)
G566325 NA non-coding upstream 73624 142724 ~ 211406 (-)
G566317 NA non-coding upstream 74774 143874 ~ 146247 (-)
LOC118965198 LOC106595074 other upstream 404784 473884 ~ 477537 (-)
LOC110519328 LOC106574843 other upstream 465919 527767 ~ 541749 (-)
LOC110487686 bora other upstream 631383 700093 ~ 708877 (-)
LOC110528715 LOC106594730 other upstream 762434 831066 ~ 842688 (-)

Expression


Co-expression Network