LOC118965197


Basic Information

Item Value
gene id LOC118965197
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 104976 ~ 107116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052463.1
cttcacaacacataacccggtccagtcgagcctcactagccagatgaagctagttGGCTGCTTATAACGGAAACTTtcggcaacagggggctgagtcactggcttactggtgctcttccatgccatccttAGGAGGGGTGCATTACTTGAGTGTGTTGAGTCGCTgatgtggtcttcctgtctgggttggcgtccccccttgggttgtgccgtggcggagatctttgtgagctatactcgaccttgtctcaggatggacctgagccctaggaccatgcctcggaaatacctggcatgatgacttcttgctgtccccagtccacctggccgtgctgctgctccagtttagtTTCAACTGTTCAACTGCCTGCGGTTCaactgcggctatggaaccctgacctgttcaccggacatgctaccttcccagacctgctgttttcaactctctagagacaacaggagcagtagagatactttcaattatcggctatgaaaagccaactg
>TU644358
ggagatctttgtgagctatactcgaccttgtctcaggatggacctgagccctaggaccatgcctcggaaatacctggcatgatgacttcttgctgtccccagtccacctggccgtgctgctgctccagtttagtTTCAACTGTTCAACTGCCTGCGGTTCaactgcggctatggaaccctgacctgttcaccggacatgctaccttcccagacctgctgttttcaactctctagagacaacaggagcagtagagatactttcaattatcggctatgaaaagccaactgacatttagtcctgaggtgctgacttgttgcaccctcgacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttccttggtaatggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgagtttctgtacagtactttgatatattagctgatgtaaggagggctatataaatacatttgtatgcacgtgtaacagtataactttagaccgtcccctcgcccatacccgggcgcgaaccagggaccctctgcacacatcaacaactgacacccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052463.1 False 504 mRNA 0.53 3 104976 106693
TU644358 True 711 lncRNA 0.48 2 106123 107116
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965195 LOC106575958 coding upstream 22466 80384 ~ 82510 (+)
LOC110495589 LOC106575981 coding upstream 95899 4368 ~ 9077 (+)
LOC110519529 LOC106592060 coding downstream 68586 175279 ~ 241157 (+)
LOC110495368 gas6 coding downstream 330376 437069 ~ 465238 (+)
LOC118936670 atp4b coding downstream 416033 522726 ~ 528216 (+)
LOC118965199 dcun1d2 coding downstream 458115 564808 ~ 574731 (+)
LOC110515852 adprhl1 coding downstream 473146 579839 ~ 596408 (+)
G566145 NA non-coding upstream 9826 65512 ~ 95150 (+)
G566141 NA non-coding upstream 44199 59162 ~ 60777 (+)
G566167 NA non-coding downstream 36202 142895 ~ 230854 (+)
G566173 LOC106592870 non-coding downstream 48469 155162 ~ 331988 (+)
G566171 LOC106592870 non-coding downstream 84682 191375 ~ 196936 (+)
G566170 LOC106574716 non-coding downstream 141011 247704 ~ 376816 (+)
G566220 NA non-coding downstream 146753 253446 ~ 296101 (+)
LOC110495358 LOC106575795 other downstream 792519 897860 ~ 901091 (+)
LOC110495360 LOC106594657 other downstream 795399 902092 ~ 952571 (+)
LOC110496962 vps8 other downstream 897957 982188 ~ 1101045 (+)
G566970 NA other downstream 1261904 1368597 ~ 1370243 (+)
phka2 LOC106574897 other downstream 1278304 1384741 ~ 1420576 (+)

Expression

LOC118965197 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC118965197 Expression in each Bioproject

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LOC118965197 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network