LOC110517689 (LOC106598090)


Basic Information

Item Value
gene id LOC110517689
gene name LOC106598090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 298275 ~ 321254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052460.1
agaagaagaagaagaggaggagaagattgggACATCTGTTACTCATGgagaccaTGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAAATCACAGAGCTAAGAGGTCTCATCCCTGCCCACATTGGCTTTGACCGTTGTTGCATCTGTGGatcgctctggatgggagtctgtcAGATGACTAATGTGATGTAGATGTCGAGCGACTTCACTGCAAATAGATTGTATGTTTTTAAATATTCAACAAtgataataaaataaaaagctaTTCCTCggcaggtagagagagtgtgatgatgatcagtatcagatagagatggtgtgatgatgatcagtTCTCTGTGGGAATGAGTTAGTAGatacaacatgtatcagatagagatggtgtgatgatcagttttctgtgggaatGAGTTAGTAGATACAAGATggtggtgtgatgatcagttttcaaCATTAGGTTGGGTGGGTTCTTTTTTTACTACATGACTTTTGTTTAATGATACACAGGCTATGAAATGACTACATGTGTTTATTACATTGTCTTATAAAACTAGATTGATTACTTTAGTAGTCATTGTTACATTTATTTGGATAACTGCAATGAATGTAATTGATCTATGACAAATAAACATTCTTTATGAATTTG
>XM_036981906.1
tatggcctggagatagaagcgcTTTCAttttctctgtcccagctttgatgcacctgtactgtctccgcctgatggtagcagagtgaacaggccGTGTCTCGGGTGGCGGAggttcttgatgatcttcttggccttccacAGAGATCATCTACAATACATATGTAATGGGTTGAAAAACGTAGACAAGAAAACAGACAACGCTTTAGTTTTTTAAACCAAGTTTCTATTTGTCTAGCTAATCAATCTATATTTTATATTCTACATGGTTTAGTAGTAGTTAGTCCATCAGTCCAATAATGTCGCTGTTGCACTGGGGTAGTGGGGGGGGGACAGGAAGTTCCGGGTTGGCGCCACCATTCTTCGGAATAAAGAAAAGGCCAGAACTGTGCTGTCCGTTTATCGTTATTTCTACAGACCGACTCAGATTAAGTCTGAGGCCGTTAACGTAaacagtgaggacaaacccagcctgcctctctccttccacactgagtagaaacctacagtcactgggtcctgattgtgacagtggagcccagtttacactgcaggatccagagatggaatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaagaagaagaagaggaggagaagattgggACATCTGTTACTCATGgagaccaTGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAAATCACAGAGCTAAGAGGTCTCATCCCTGCCCACATTGTGAGGAGATTTTCCCATTTCTATCAAAACTAAAAATACACTtaaaaatacacacaggagataaTCTGTATTCCTgcactgactgtgggaagagtttaaAAACATCACAGGCTCTGACAGTTCATCAGAGagtgcacactggagagaaaccttactcctgctctgattgTGGGGAGCGTTTCTCTCATCAGAGCAacttaaaaacacaccaacgtatacacacaggggagaagccttactactgctctgactgtggaaaatgtttCACAACATCAACTGGGCTAagagttcatcagagaacacacacaggagagaagccttacttctgTTCTGACTGTGGGAGGAGTTTCATAACATCAAGGACTCTGACAGTTCATCAGAAAatgcacactggagagaaaccttactaCTGCTCTGATTGTGGGGAGAGTTTCTCTCAACAGAGCAATTTTAAAACACACCAACgtacacacacaggagataagccttactactgctctgactgtgggaagggTTTCTCTCAACAGATCCACTTAAAATGTCACCAGcgaatacatacaggagagaagccttactcctgcccTGACTGTGGGAAGGGTTTCTCCCAACAGAGCAACTTAAAATGTCACCAGCGAATACAtaaaggagagaagccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaagttcatcaaagaggacacacaggagagaagccttactcctgctctgactgtgggaagagtttctcccAACAGGGCAGCTTAAAAATACACCAACGCATACATAAaggagagaaaccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaaattcatcaaagaaaacacacaggagagaagccttacttctgctctgactgtCAGAAGAGTTTCTCCCAATTGGCTTCCTTAAAAACACATCAACGTATACATAAAGGCAAGAAGCCTGATCAGTTGTCTCAGGCCAGTTAAGATTAGTCACTCCATCGCTTCATTCTCATCTCGTAAAGGAAGTGGTAACAGGGAATTTTATAACATTAAGACGAACACTCTATTGTAATCCTATTGTTTCTCATTGACAACTGTGCAGAggaggtggtgctggagatgaatattgaattgaatatgaagttgaaacatttaaacattttccttttaaggcaaaaacaaaatgaGGTTGGTctgttggtcggggtggatgggtcTGCATATAACATGAACGTATTGCAACCCAAAGGTTTCATGTTCGAATCACATCatagacaactttagcattttagctaataagcaactttgcaactaaactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattacaaaatcatgggcattaatatggacttggtccc
>XM_036981908.1
aaggctgtaacgtaacaacattttgaaaaaaggaaggggtctgaatactttctgaatgcactgcaggCTGTGACTTGCTTAGGCTCAGTGACTTGCTTAGGCTCAGTGACTTGCTTAGGCTCAGTGACTTGCTTAGGCTCAGTGACTTGCTTAGGCTCAGTGACTTTGAATTTATATTTAGAAACACCAGTTTGGCCAGAGTTTGTTTGCTTCTGGTTCATgtgatggtgcctggagagcaggccaGCAGCGGAGAATATCCTCTCCGCGCTTGCAGAGCCGCTGGGGATGGCAAACACCTTTTTTTGGCCACTCTTTCCAGGCTGGGCAGGGATGCAGAGTTGTTGTTTTTCTTCCTATAGGTAGGCCTTAAagtttttaggcaaaataacccaaACCTAAATATAAAGCTCCTTGAAAGTGTGACTATGTCCGGCCTATTGGGCCTAATTCAATTATGGCCTATTGTCTAGATAATAGAACCAAAATGAAGGAAACTTCTAAGATATCTGATTTTtagtttataaatactttgctacaatgacacacttcaTTAGCTACCCACCTCGTTCCTTTCATTTAGCATGTGCACGTAGTAAAGTACACCATCATGTTTTCAGGAtatgtcttttcagattccactatggttctttagttgtggacattaCATCACAAGAAATggctcttggtcctcatctttGACGACTATAATTAAGTCTGAGGCTggtaacatcaacagtgaggacaaacccagcctgcctctccccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacaatagagctgaatgtcaacattaaagatgaagaagaggaggagaagattgggAAATCTGTTTCTCATGgagaccaTGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAAATCACAGAGCTAAGAGGTCTCATCCCTGCCCACATTGTGAGGAGATTTTCCCATTTCTATCAAAACTAAAAATACACTtaaaaatacacacaggagataaTCTGTATTCCTgcactgactgtgggaagagtttaaAAACATCACAGGCTCTGACAGTTCATCAGAGagtgcacactggagagaaaccttactcctgctctgattgTGGGGAGCGTTTCTCTCATCAGAGCAacttaaaaacacaccaacgtatacacacaggggagaagccttactactgctctgactgtggaaaatgtttCACAACATCAACTGGGCTAagagttcatcagagaacacacacaggagagaagccttacttctgTTCTGACTGTGGGAGGAGTTTCATAACATCAAGGACTCTGACAGTTCATCAGAAAatgcacactggagagaaaccttactaCTGCTCTGATTGTGGGGAGAGTTTCTCTCAACAGAGCAATTTTAAAACACACCAACgtacacacacaggagataagccttactactgctctgactgtgggaagggTTTCTCTCAACAGATCCACTTAAAATGTCACCAGcgaatacatacaggagagaagccttactcctgcccTGACTGTGGGAAGGGTTTCTCCCAACAGAGCAACTTAAAATGTCACCAGCGAATACAtaaaggagagaagccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaagttcatcaaagaggacacacaggagagaagccttactcctgctctgactgtgggaagagtttctcccAACAGGGCAGCTTAAAAATACACCAACGCATACATAAaggagagaaaccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaaattcatcaaagaaaacacacaggagagaagccttacttctgctctgactgtCAGAAGAGTTTCTCCCAATTGGCTTCCTTAAAAACACATCAACGTATACATAAAGGCAAGAAGCCTGATCAGTTGTCTCAGGCCAGTTAAGATTAGTCACTCCATCGCTTCATTCTCATCTCGTAAAGGAAGTGGTAACAGGGAATTTTATAACATTAAGACGAACACTCTATTGTAATCCTATTGTTTCTCATTGACAACTGTGCAGAggaggtggtgctggagatgaatattgaattgaatatgaagttgaaacatttaaacattttccttttaaggcaaaaacaaaatgaGGTTGGTctgttggtcggggtggatgggtcTGCATATAACATGAACGTATTGCAACCCAAAGGTTTCATGTTCGAATCACATCatagacaactttagcattttagctaataagcaactttgcaactaaactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattacaaaatcatgggcattaatatggacttggtccc
>XM_036981907.1
catccggtgaaatatctgtctcattgttctatctgtgatgTCGCTGTTGAACTGTGGTAGTGGAGGAACAGgaagtaaaaacaacaacaaagaaagCCGCAGAACTGTGCTGTCGAAACGATATGTATTACTACAGGACGACTATAATTAAGTCTGAGGCTggtaacatcaacagtgaggacaaacccagcctgcctctccccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacaatagagctgaatgtcaacattaaagatgaagaagaggaggagaagattgggAAATCTGTTTCTCATGgagaccaTGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGGAAAATCACAGAGCTAAGAGGTCTCATCCCTGCCCACATTGTGAGGAGATTTTCCCATTTCTATCAAAACTAAAAATACACTtaaaaatacacacaggagataaTCTGTATTCCTgcactgactgtgggaagagtttaaAAACATCACAGGCTCTGACAGTTCATCAGAGagtgcacactggagagaaaccttactcctgctctgattgTGGGGAGCGTTTCTCTCATCAGAGCAacttaaaaacacaccaacgtatacacacaggggagaagccttactactgctctgactgtggaaaatgtttCACAACATCAACTGGGCTAagagttcatcagagaacacacacaggagagaagccttacttctgTTCTGACTGTGGGAGGAGTTTCATAACATCAAGGACTCTGACAGTTCATCAGAAAatgcacactggagagaaaccttactaCTGCTCTGATTGTGGGGAGAGTTTCTCTCAACAGAGCAATTTTAAAACACACCAACgtacacacacaggagataagccttactactgctctgactgtgggaagggTTTCTCTCAACAGATCCACTTAAAATGTCACCAGcgaatacatacaggagagaagccttactcctgcccTGACTGTGGGAAGGGTTTCTCCCAACAGAGCAACTTAAAATGTCACCAGCGAATACAtaaaggagagaagccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaagttcatcaaagaggacacacaggagagaagccttactcctgctctgactgtgggaagagtttctcccAACAGGGCAGCTTAAAAATACACCAACGCATACATAAaggagagaaaccttactcctgctctgactgtgggaagtgcttcacaacatcaactgagctaaaaattcatcaaagaaaacacacaggagagaagccttacttctgctctgactgtCAGAAGAGTTTCTCCCAATTGGCTTCCTTAAAAACACATCAACGTATACATAAAGGCAAGAAGCCTGATCAGTTGTCTCAGGCCAGTTAAGATTAGTCACTCCATCGCTTCATTCTCATCTCGTAAAGGAAGTGGTAACAGGGAATTTTATAACATTAAGACGAACACTCTATTGTAATCCTATTGTTTCTCATTGACAACTGTGCAGAggaggtggtgctggagatgaatattgaattgaatatgaagttgaaacatttaaacattttccttttaaggcaaaaacaaaatgaGGTTGGTctgttggtcggggtggatgggtcTGCATATAACATGAACGTATTGCAACCCAAAGGTTTCATGTTCGAATCACATCatagacaactttagcattttagctaataagcaactttgcaactaaactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattacaaaatcatgggcattaatatggacttggtccc

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052460.1 False 654 mRNA 0.37 3 298275 306272
XM_036981906.1 False 2188 mRNA 0.43 3 301006 309753
XM_036981908.1 False 2462 mRNA 0.43 3 301006 317231
XM_036981907.1 True 1898 mRNA 0.43 3 301006 321254

Neighbor

gene id symbol gene type direction distance location
LOC110517686 LOC106592870 coding downstream 667 260449 ~ 297608 (-)
LOC110519534 LOC106575793 coding downstream 18857 242557 ~ 279418 (-)
LOC110510711 LOC106575981 coding downstream 89684 188244 ~ 208591 (-)
LOC110511225 LOC106574981 coding downstream 130950 150789 ~ 167325 (-)
LOC118965194 LOC106574951 coding downstream 169015 115364 ~ 129260 (-)
LOC110527261 LOC106595203 coding upstream 5149 326403 ~ 332021 (-)
LOC118965193 LOC106593324 coding upstream 20967 342221 ~ 385831 (-)
LOC118965330 LOC106575882 coding upstream 48399 369653 ~ 372114 (-)
LOC110515905 LOC106592870 coding upstream 71837 393091 ~ 403332 (-)
LOC110495372 LOC107687747 coding upstream 88039 408765 ~ 429223 (-)
G566302 NA non-coding downstream 16168 280865 ~ 282107 (-)
G566400 NA non-coding downstream 32261 248837 ~ 266014 (-)
G566403 NA non-coding downstream 35679 261921 ~ 262596 (-)
G566325 NA non-coding downstream 86869 142724 ~ 211406 (-)
G566295 NA non-coding upstream 21118 342372 ~ 370393 (-)
G566432 NA non-coding upstream 36704 357958 ~ 358415 (-)
G566452 NA non-coding upstream 85809 407063 ~ 407372 (-)
LOC118965198 LOC106595074 other upstream 152630 473884 ~ 477537 (-)
LOC110519328 LOC106574843 other upstream 213765 527767 ~ 541749 (-)
LOC110487686 bora other upstream 379229 700093 ~ 708877 (-)
LOC110528715 LOC106594730 other upstream 510280 831066 ~ 842688 (-)
G567147 NA other upstream 882621 1203875 ~ 1207277 (-)

Expression


Co-expression Network