LOC110527261 (LOC106595203)


Basic Information

Item Value
gene id LOC110527261
gene name LOC106595203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 326403 ~ 332021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981900.1
GTCAAGAAAATAACTTTTGTGTCCGTTTGTCTTTATTACTACAGACCGACTCAGATTAAGTCTGAGGTcggtaacatcaacagtgaggacaaacccaacctgcctctctccttccacactgagtagaaacctacagtcactgggtcctgattgtgacagtggagcccattttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactggagctgaatgtcaacattaaagatgaagaagaggaggagaagattgggAAATCTGTTTATCATGATAAAGgagaccaTGTTGAGACATTCTCTACATCCAGAGAGCAACAGCAGCAAGGTCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAATTCTATCAAAActaaaaatacatctaaaaatgcAAAGAGGAGAGAATCTGTATTCCTGTACTGACTGTGAGAAGAGCTTCACAACATCAAGGGCTCTGACAGTTCATCAGAAAGAGCACACTGGAGAAAAGTCTTACTCCTGCACTGACTGTGGGAAATGCTTCAATAGATCATCTAAATTAACCATTCATCAGAGagtgcacacaggagagaagccttactcctgctccgATTGTGGATCGAGTTTCTCCCAATATGGCCACTTAAAATCACACCAACGTATACACACCGGAGAGAAGCCATACTTCTGCGCTGACTGTGGGAATAGCTTCACAACATCGAGGGCTCTGACAATTCATCAGAGagtgcacactggagagaagccttatttcTGCTCTgattgtggaaagagtttctcccGATTGGACACCTTAAAAAATCACCAATTAATACATAAAGGACAGAAGCcgtactcctgctctgactgtgggaaatgCTTCATTAAATCAGCTAAATTAACCATTCATCAGAGagtgcacactggagagaagccttacacctgctctgactgtggagagAGTTTCTCCCGATTGGATGCCTTAAAAAGTCACCAACTAATACATAAAGGACAGAAACCTtacgtctgctctgactgtgggaagagtttctctcaaatgggCAACTTAAAAACCCACCAACGTATACACTCAGGGGAGAAGCCATTCTCCTGTTCTGACTGTGGGAAGGGATTCTCAGTATCGGGCAACCTAAAAACTCACCAACGTATACATAAAGGAGAGAAGCCATTCTCCTGCTCTGATTGTGGGAAGAGCTTCTCCATGTCAGGCAACTTAAAAACCCACCTACGTATCCAtaaaggagagaagccttactcctgttCTGACTGTGGGAAATGCTATAAAACATCAGCAGAGGTAAATGTTCattggagaacacacacaggagagaagccttaccactgtgaCTGTGGGAAAAGTTTCTCCAGGTTGAATACCTTAAAAACCCACCAACGTATACACACAGGCGAAAAGCCATTCTCCTGCTCtgtctgtgggaagagtttctctgTATCATGCAACCTAAAAACCCACCAAcgtacacacacaggagagaagccattctcctgctctgactgtgggaagagtttctccaTATCGGGCAACCTAAAAACCCACCATTGTATACAtaaaggagagaagccttactcctgctctgctCGTGGTAAATGCTGAAGTAAACGTTCATCGCcgaacacacaggagagaagccttaccactgtgaCTGTGGACAAGAGTTTCTCCAGATTGAATACCTTATAAA

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF26.1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981900.1 True 1742 mRNA 0.44 2 326403 332021

Neighbor

gene id symbol gene type direction distance location
LOC110517689 LOC106598090 coding downstream 5149 298275 ~ 321254 (-)
LOC110517686 LOC106592870 coding downstream 28795 260449 ~ 297608 (-)
LOC110519534 LOC106575793 coding downstream 46985 242557 ~ 279418 (-)
LOC110510711 LOC106575981 coding downstream 117812 188244 ~ 208591 (-)
LOC110511225 LOC106574981 coding downstream 159078 150789 ~ 167325 (-)
LOC118965193 LOC106593324 coding upstream 10200 342221 ~ 385831 (-)
LOC118965330 LOC106575882 coding upstream 37632 369653 ~ 372114 (-)
LOC110515905 LOC106592870 coding upstream 61070 393091 ~ 403332 (-)
LOC110495372 LOC107687747 coding upstream 77272 408765 ~ 429223 (-)
LOC118965198 LOC106595074 coding upstream 142083 473884 ~ 477537 (-)
G566421 NA non-coding downstream 5489 319997 ~ 320914 (-)
G566302 NA non-coding downstream 44296 280865 ~ 282107 (-)
G566400 NA non-coding downstream 60389 248837 ~ 266014 (-)
G566403 NA non-coding downstream 63807 261921 ~ 262596 (-)
G566295 NA non-coding upstream 10351 342372 ~ 370393 (-)
G566432 NA non-coding upstream 25937 357958 ~ 358415 (-)
G566452 NA non-coding upstream 75042 407063 ~ 407372 (-)
LOC110519328 LOC106574843 other upstream 202998 527767 ~ 541749 (-)
LOC110487686 bora other upstream 368462 700093 ~ 708877 (-)
LOC110528715 LOC106594730 other upstream 499513 831066 ~ 842688 (-)
G567147 NA other upstream 871854 1203875 ~ 1207277 (-)

Expression


Co-expression Network