LOC118936671 (LOC106574830)


Basic Information

Item Value
gene id LOC118936671
gene name LOC106574830
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 725007 ~ 818367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981963.1
CTTTTGGGGGGGGTTATTATTTATAAACAGTGGGCAGCTTCCACACTCTGAATAGTCAACATCCTACAGTTAAAATTCAGTGGCGTTATCTCCGGAGCTTGTGCTGCTTATACAAATTATTCATCAAGGTGTTCAGTTTCTATTCCAGTTTTATTCTAGCCTAATGGACCGCATATTCTGAACACGGTCAACAGATGCGTGTGATGTTTTTCTAAGAATATTTAGAGGCTCCTCCTCTTTTTCATGATGTGACAGTATCATCCCGTCCGCGAGCTCCTCACTCTAGCTCAATTCTGTCATCGGTAACCTGACGCACGGACCCTTTATCCCACTCACTGCATCTCCGACATTTCtcagcttaaaaaaaaaaaaactaccgACGAGCTCTCAACTCTTTGATTTCTGTTTCTCTCGCGACACTTTTTTTAGACTACACTTGACTTTCGAGACTTtcagcttgttttttttttttaaatacagattTGGATCATGGCCTCTCCGGCTGCTCTCATGCCCTCGGTTCCTCTCGTCCAACCGCCTCCGATACAGACTTCACCGGCGACCAACTCTCCGCCACCAGCAACCACGTCCTCATCCCCTTCACCGTCTATCGCGCCCACCGGACTGAACCCTTTCAGCGCGGACCTCTTACCAGTACCTGTCGGTAGCCCTGGCGCACCGGTCGACGTCCTGCCCTGTAAACCGGTGTATTCTACCCCGTCGCCGGTTGAGAACACTCCGCAAAACAACGAGGTTAAAATGGTCGAGGTCAGAGGCGCCAAGCTCGCCTCTTTCACGGTAAAAGACAACGAGCTAATCTGCCTCCCGCAGGCGTTCGACCTGTTTCTGAAACACTTGGTCGGCGGACTGCACACGGTCTATACCAAGCTGAAGCGGCTCCAGATCACACCGGTGGTCTGTAACGTGGAACAGGTCCGCATCCTCCGGGGCCTCGGAGCTATTCAACCGGGAGTGAACCGGTGTAAACTCATCTCCAGGAGAGACTTCGAGACGCTGTACAACGACTGTACTAACGCCAGCTCGCGCCCTGGACGCCCCCCAAAGAGGGCTCAGAGTATGACATCATCAGAGAACCAACAccttctgtctcattctgtcaGCGGGCTGATGTCAGCTGGAATCATGCCCCCTACTGgtctgacAGCGGCTGCTCTTGCTGAGGCCATGAAGACTAAAAAGATAAAGTTAGAGGTGATGGGGGGTTACCATAGTAACCACCAccagcatcatcatcaccacGGGACAGACGGAGAGAACGGAGGAGATCACCACAACTCCTCCAGTCTGGgtcTGGAACACCTCCCGTTCATGATGATGTCACACCCCCTGATCCCTGTCAGTATGGCCCCTGCCTCCGTCTCCATGGCAATGAGTCAAATGAACCACCTCAACACGTTAGCCAGCATGGCCTCTGCTGCCCAGGTCCAccactctaccctctcctcccgTGGCCGCATGGTCACCTCCgttataaagGAGCGTGTTCGGGAcagtccttctccctctctcgagGACGGGAGGAGGTCTGGGAGTCACCTGTCCTCTCGTCACAGCAGCAGCATCTCCAGCTCCCCAGTACACACAGAACACTCTGCAGACAGGACCCACGTGCAGCAGAACGGCCTGTCCTCCAGCCATGCTCTGTTGGGTCTATCTCCCAGTGCTGTGCCCGGTCCTAAAGAAGGAGATGTGGCCACCCTGGACTCTGGCCACGAAGCTAAGAGGAACCATGTTGAGAGAGATGACTGTGGTTCCCTGAGCACCCAGACAGTCAGAGAACCAATCAGAGAGCCATTCAGAGAGCCAGTCAGAGAACCAATCGGAGACGGCTATGAGAGGCTGTCGTTCTCGGGGCAGAAGCTTCCTGCAGGGTTCCCCGGGCCCTTTATCTTCCCTGAGGGGCTGTCGTCAATAGAGACTCTGCTCACTAACATCCAGGGCTTGCTGAAGGTTGCCATAGACAACACGCGCGCTCAGGACAAGCAGGTGCAGACGGAGAAGTCAGAGCTGAAGATGGAACTgttcagagagagggagctaaGAGAGACACTGGAGAGACAGCTCACCATGGAGCAGAAAAACAGAGTGCTGATCCAGAAGCGTctgaagaaagagaagaagagtaaGAGGAAACTTCAGGAGGCTCTGCAGTTTGAGTGTAAACTGAGAGACCATGCTGAGCAGACTCTGCAGCAGACTGTAGCGTCAGACAGAGCCCTCTGTGACTCACTGACCCAGGAAGTAGACAACGGTAGCCAAGGTAACGGCAGGACTGACGCAGAGGCAGCGATACAAGATGGAAGACTCTTCCTGAAAACCACAGTGATGTATTGAAGACAacatggagagaagagaagatcGATTCGAGCACCATTGAAGAGATTCCAGGGACTTGCATCAGCAACATCATGGACGTTTCACTGTCATAAAAGACTGACAATACACAACAAAGAACAAATAATCAAAGAATTGTGATAACAGTGTTACGTGCAATACCAATGTCTTTCACAGAAACACAATCACAGCAAAGTGGAACTGAAGGAGAGATTTTTCTACTTTATTTAAACCAGCCTGAATGCTCAGAGAAGGACAAATCCACTTCCAATTTTTGACTTGTATTCCTGTCTCAAGTTTTCTAAGATTTCAACGTTTTAAAGCATAATGTCACGAAGGTCGGTAAATCTAGAGGTTAATTTATTACGTTATTTCTGTACATAAATTGATACAATGTTTCATCACAA
>XM_036981962.1
AGTCTTCATCAGCATTAGCAGGGAACTGTCAAGGGTATGCATTCGAGGGGTTGTGGAGGCTCAGTCCCTAATGTGGTGTGTGACAGGATGATGGGGTGGCGGCTTGAGGAGGGTCAGAGGTTAAAGTCAGGGTCCTCTTGTCTGTCCCTCTTCTCCCCCCGTAGAGGGCCCTTTTGGGGGGGGTTATTATTTATAAACAGTGGGCAGCTTCCACACTCTGAATAGTCAACATCCTACAGTTAAAATTCAGTGGCGTTATCTCCGGAGCTTGTGCTGCTTATACAAATTATTCATCAAGGTGTTCAGTTTCTATTCCAGTTTTATTCTAGCCTAATGGACCGCATATTCTGAACACGGTCAACAGATGCGTGTGATGTTTTTCTAAGAATATTTAGAGGCTCCTCCTCTTTTTCATGATGTGACAGTATCATCCCGTCCGCGAGCTCCTCACTCTAGCTCAATTCTGTCATCGGTAACCTGACGCACGGACCCTTTATCCCACTCACTGCATCTCCGACATTTCtcagcttaaaaaaaaaaaaactaccgACGAGCTCTCAACTCTTTGATTTCTGTTTCTCTCGCGACACTTTTTTTAGACTACACTTGACTTTCGAGACTTtcagcttgttttttttttttaaatacagattTGGATCATGGCCTCTCCGGCTGCTCTCATGCCCTCGGTTCCTCTCGTCCAACCGCCTCCGATACAGACTTCACCGGCGACCAACTCTCCGCCACCAGCAACCACGTCCTCATCCCCTTCACCGTCTATCGCGCCCACCGGACTGAACCCTTTCAGCGCGGACCTCTTACCAGTACCTGTCGGTAGCCCTGGCGCACCGGTCGACGTCCTGCCCTGTAAACCGGTGTATTCTACCCCGTCGCCGGTTGAGAACACTCCGCAAAACAACGAGGTTAAAATGGTCGAGGTCAGAGGCGCCAAGCTCGCCTCTTTCACGGTAAAAGACAACGAGCTAATCTGCCTCCCGCAGGCGTTCGACCTGTTTCTGAAACACTTGGTCGGCGGACTGCACACGGTCTATACCAAGCTGAAGCGGCTCCAGATCACACCGGTGGTCTGTAACGTGGAACAGGTCCGCATCCTCCGGGGCCTCGGAGCTATTCAACCGGGAGTGAACCGGTGTAAACTCATCTCCAGGAGAGACTTCGAGACGCTGTACAACGACTGTACTAACGCCAGCTCGCGCCCTGGACGCCCCCCAAAGAGGGCTCAGAGTATGACATCATCAGAGAACCAACAccttctgtctcattctgtcaGCGGGCTGATGTCAGCTGGAATCATGCCCCCTACTGgtctgacAGCGGCTGCTCTTGCTGAGGCCATGAAGACTAAAAAGATAAAGTTAGAGGTGATGGGGGGTTACCATAGTAACCACCAccagcatcatcatcaccacGGGACAGACGGAGAGAACGGAGGAGATCACCACAACTCCTCCAGTCTGGgtcTGGAACACCTCCCGTTCATGATGATGTCACACCCCCTGATCCCTGTCAGTATGGCCCCTGCCTCCGTCTCCATGGCAATGAGTCAAATGAACCACCTCAACACGTTAGCCAGCATGGCCTCTGCTGCCCAGGTCCAccactctaccctctcctcccgTGGCCGCATGGTCACCTCCgttataaagGAGCGTGTTCGGGAcagtccttctccctctctcgagGACGGGAGGAGGTCTGGGAGTCACCTGTCCTCTCGTCACAGCAGCAGCATCTCCAGCTCCCCAGTACACACAGAACACTCTGCAGACAGGACCCACGTGCAGCAGAACGGCCTGTCCTCCAGCCATGCTCTGTTGGGTCTATCTCCCAGTGCTGTGCCCGGTCCTAAAGAAGGAGATGTGGCCACCCTGGACTCTGGCCACGAAGCTAAGAGGAACCATGTTGAGAGAGATGACTGTGGTTCCCTGAGCACCCAGACAGTCAGAGAACCAATCAGAGAGCCATTCAGAGAGCCAGTCAGAGAACCAATCGGAGACGGCTATGAGAGGCTGTCGTTCTCGGGGCAGAAGCTTCCTGCAGGGTTCCCCGGGCCCTTTATCTTCCCTGAGGGGCTGTCGTCAATAGAGACTCTGCTCACTAACATCCAGCAGGGCTTGCTGAAGGTTGCCATAGACAACACGCGCGCTCAGGACAAGCAGGTGCAGACGGAGAAGTCAGAGCTGAAGATGGAACTgttcagagagagggagctaaGAGAGACACTGGAGAGACAGCTCACCATGGAGCAGAAAAACAGAGTGCTGATCCAGAAGCGTctgaagaaagagaagaagagtaaGAGGAAACTTCAGGAGGCTCTGCAGTTTGAGTGTAAACTGAGAGACCATGCTGAGCAGACTCTGCAGCAGACTGTAGCGTCAGACAGAGCCCTCTGTGACTCACTGACCCAGGAAGTAGACAACGGTAGCCAAGGTAACGGCAGGACTGACGCAGAGGCAGCGATACAAGATGGAAGACTCTTCCTGAAAACCACAGTGATGTATTGAAGACAacatggagagaagagaagatcGATTCGAGCACCATTGAAGAGATTCCAGGGACTTGCATCAGCAACATCATGGACGTTTCACTGTCATAAAAGACTGACAATACACAACAAAGAACAAATAATCAAAGAATTGTGATAACAGTGTTACGTGCAATACCAATGTCTTTCACAGAAACACAATCACAGCAAAGTGGAACTGAAGGAGAGATTTTTCTACTTTATTTAAACCAGCCTGAATGCTCAGAGAAGGACAAATCCACTTCCAATTTTTGACTTGTATTCCTGTCTCAAGTTTTCTAAGATTTCAACGTTTTAAAGCATAATGTCACGAAGGTCGGTAAATCTAGAGGTTAATTTATTACGTTATTTCTGTACATAAATTGATACAATGTTTCATCACAA
>TU645096
GTctgaagaaagagaagaagagtaaGAGGAAACTTCAGGAGGCTCTGCAGTTTGAGTGTAAACTGAGAGACCATGCTGAGCAGACTCTGCAGCAGACTGTAGCGTCAGACAGAGCCCTCTGTGACTCACTGACCCAGGAAGTAGACAACGGTAGCCAAGGTAACGGCAGGACTGACGCAGAGGCAGCGATACAAGATGGAAGACTCTTCCTGAAAACCACAGTGATGTATTGAAGACAacatggagagaagagaagatcGATTCGAGCACCATTGAAGAGATTCCAGGGACTTGCATCAGCAACATCATGGACGTTTCACTGTCATAAAAGACTGACTTGTGATAACAGTGTTACGTGCAATACCAATGTCTTTCACAGAAACACAATCACAGCAAAGTGGAACTGAAGGAGAGATTTTTCTACTTTATTTAAACCAGCCTGAATGCTCAGAGAAGGACAAATCCACTTCCAATTTTTGACTTGTATTCCTGTCTCAAGTTTTCTAAGATTTCAACGTTTTAAAGCATAATGTCACGAAGGTCGGTAAATCTAGAGGTTAATTTATTACGTTATTTCTGTACATAAATTGATACAATGTTTCATCACAATATTTGTATTTGCTGTTTATTCTAGTGATGAAAAATGGCAGTTAGGCCTCGGCCATTGTTGTATATCAGATGAAAGGGAAAGGACTCCTGACCCATGGAAGGCCATGTACATAAAGTAAAgacattgtattgtgtattgtaatgCAGTAGATCAGCTAGA

Function

NR:

description
PREDICTED: dachshund homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981963.1 False 2762 mRNA 0.50 11 725167 818197
XM_036981962.1 False 2935 mRNA 0.51 11 725167 818367
TU645096 True 769 lncRNA 0.41 4 725007 732747

Neighbor

gene id symbol gene type direction distance location
LOC110487686 bora coding downstream 16290 700093 ~ 708877 (-)
LOC110527172 LOC106575921 coding downstream 43740 677077 ~ 681427 (-)
LOC118965201 LOC106583510 coding downstream 51976 669059 ~ 673191 (-)
LOC110527163 LOC106575909 coding downstream 74576 629957 ~ 650591 (-)
LOC110527165 lamp1 coding downstream 99731 610738 ~ 625436 (-)
LOC110528715 LOC106594730 coding upstream 12699 831066 ~ 842688 (-)
LOC110495363 LOC106574929 coding upstream 73425 891792 ~ 896858 (-)
LOC110517159 LOC106596293 coding upstream 145087 963454 ~ 976670 (-)
LOC118936672 LOC106596203 coding upstream 303459 1121826 ~ 1148001 (-)
LOC110495354 LOC106593697 coding upstream 405046 1223413 ~ 1247319 (-)
G566718 NA non-coding downstream 3667 721069 ~ 721500 (-)
G566715 NA non-coding downstream 8322 716578 ~ 716845 (-)
G566714 NA non-coding downstream 11979 712942 ~ 713188 (-)
G566713 NA non-coding downstream 12999 711968 ~ 712168 (-)
G566711 NA non-coding downstream 15469 708959 ~ 709698 (-)
G566750 NA non-coding upstream 35042 853409 ~ 856963 (-)
G566759 NA non-coding upstream 59959 878326 ~ 878718 (-)
G566781 NA non-coding upstream 129321 947688 ~ 947889 (-)
G566783 NA non-coding upstream 133470 951837 ~ 954510 (-)
G566785 NA non-coding upstream 137165 955532 ~ 956045 (-)
LOC110519328 LOC106574843 other downstream 183461 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 250689 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 473974 242557 ~ 279418 (-)
G567147 NA other upstream 385508 1203875 ~ 1207277 (-)
LOC118965204 LOC106592365 other upstream 429290 1247650 ~ 1284997 (-)
G567242 NA other upstream 660985 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 752992 1571359 ~ 1571804 (-)
G566725 NA non-coding upstream 7293 740040 ~ 741862 (-)
G566731 NA non-coding upstream 15181 747928 ~ 749264 (-)
G566740 NA non-coding upstream 57590 790337 ~ 792792 (-)
G566742 NA non-coding upstream 78748 811495 ~ 874295 (-)

Expression


Co-expression Network