LOC118936672 (LOC106596203)


Basic Information

Item Value
gene id LOC118936672
gene name LOC106596203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 1121826 ~ 1148001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981982.1
gaggaggaggggatagcCTAAGAGGAAGGAAACGGCGAGGGCTTCATCAACAGACAGGGGAGTCTCTTGTCAGGCTGATAGAAGGCTGGCTATATCAAATGAAAGCCTGACACGGGATACGCCACGGAAATCTCTCTGGCTGAGATAACCTCGTCGACGTTTACAGAAAATCATTCCAGCGGCTGGAGATCCAGATGTTTACGTAAAACAAGCTGTCAATCGTATTCGTGGAACTGGAACTTTCATCGCATTTTGATTCTCTCTGTGCTGCTTGGGGGGGTGGCTACAACGGTGCCACATTTAACTCGTTTGCGTCACGCTTTGGAGTTTCCTCCCTGGTTAGACATTTGGCGTTTGCTGAGGTTTTGAGACCAAAACCGAAATTCCAGACCATTTTTGGCTGGTGGGCTAAAACTGCGTTCTCCGATGGGTTACATGGCGTGCGTTTGATCCTGGGGTGTGCGCTGCGCGATGGCCGCGTCGGGCGGACGGAAGAGCGAGAAGTTGGATGAGGCACAGGCGTTGGCCCGGAGCTGCGCGGGGAGACCGGACTTTCTCCCGTGCGACGGACTGTCCATCTGCGCAACACACAGCCACGGGAAGTGCTTCAAGCTCCACTGGTGCTGCCACTTGGGATGGTGTCACTgTAAATATGTGTACCAGCCGATGACCAACGTGTGCCGCCTCCCCAGCACCCCAGTGCCTGCCACGCCCACAGACCACCCCCATACCATGGACCTGACAGTCTCATTGGCCGAACGCTTCCTCATGACCGCCCCCGCCTTCCAAGCCCCGCCCTGCCTGGAGTCGCCAAAGTTCTGCATCATCTCAGACCTCTTTGTGGACGACTACATGGTGAAACGCATCAATGGGAAGATGTGCTATGTCCAGAGACCTCAACCTTCGACCATGCCCAGCCCGCCTCAATCACATCCCCCTCACCCCTGGTCCAAACCCCACCCCCAACGGACCCCCAGACACCACCCACACCCCCAGCCCAGACCACACCCCCAGGGCACCAAGCCCAGTGCCCTGGGGGACAAGGTCACCACCCCCAAAATAGACCACTGCTCCTCCCCGTCCAGCTCTGAGGATTCTGGGATAAATGCGCTGGGCGGCCATTACATGGAGTCATGTGACGAGGgttctgaggaagaggaggaagacgaggaggaagtggaggaggaggatgaagagttAAGTAGTGATGGAGAGTCTAGTCCACTAAGTATGTGGAATCAAGATGAGTGTTCTCTGCTCTCTCCGTCCAAGTCTATGGTGGAGATTATTGAGAAGATCGAGACAACTGTGTGAGACAACTTGCACTGTCGCGTTGAAATGGAGACGATGAGACAGTGATCTAGCCGGTTCAGCttagagccacacacacacacacacacacacacacacacacacactagcctgtCAACGTTCCTCTAACTTATACTAATCGTACAACATCAAAAcagtgacctgttacctatgaACTTTGACCTTTCACCTGTTATAGCATGGTTATCTATGACCTTTCACCCTGTTATAGCATGGTTACCTACGGCCTTTCACCCTTTTATAGCATGGTGTACCGATCGCATTCTACTCTGGAGGGATTTCACTTATCTTTCCAGACCAGGAGTCAGCTGAAAGAACAAGAACAATGAACAAGAGCACTAATGAAGGAATCAGTGAATGTGATCTAGTCCATGACCCAACACACTAAAAGAAGAGCACGAAGTGACCAAACACACT

Function

NR:

description
UPF0524 protein C3orf70 homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981982.1 True 1749 mRNA 0.53 2 1121826 1148001

Neighbor

gene id symbol gene type direction distance location
LOC110517159 LOC106596293 coding downstream 145156 963454 ~ 976670 (-)
LOC110495363 LOC106574929 coding downstream 224968 891792 ~ 896858 (-)
LOC110528715 LOC106594730 coding downstream 279138 831066 ~ 842688 (-)
LOC118936671 LOC106574830 coding downstream 303459 725007 ~ 818367 (-)
LOC110487686 bora coding downstream 412949 700093 ~ 708877 (-)
LOC110495354 LOC106593697 coding upstream 75412 1223413 ~ 1247319 (-)
LOC118965204 LOC106592365 coding upstream 99649 1247650 ~ 1284997 (-)
LOC110496997 LOC106595477 coding upstream 137254 1285255 ~ 1312938 (-)
LOC110496970 LOC106574861 coding upstream 166640 1314641 ~ 1322859 (-)
LOC110495433 LOC106574863 coding upstream 174427 1322428 ~ 1326256 (-)
G567089 NA non-coding downstream 11256 1110020 ~ 1110570 (-)
G567084 NA non-coding downstream 20782 1100621 ~ 1101044 (-)
G567085 NA non-coding downstream 29868 1088644 ~ 1091958 (-)
G567080 NA non-coding downstream 54700 1066829 ~ 1067126 (-)
G567072 NA non-coding downstream 74344 1043652 ~ 1047482 (-)
G567159 NA non-coding upstream 105276 1253277 ~ 1253998 (-)
G567171 NA non-coding upstream 147857 1295858 ~ 1296787 (-)
G567177 NA non-coding upstream 162472 1310473 ~ 1310859 (-)
G567179 NA non-coding upstream 172331 1320332 ~ 1320787 (-)
LOC110519328 LOC106574843 other downstream 580120 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 647348 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 870633 242557 ~ 279418 (-)
G567147 NA other upstream 55874 1203875 ~ 1207277 (-)
G567242 NA other upstream 331351 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 423358 1571359 ~ 1571804 (-)
LOC110527180 LOC106575808 other upstream 464867 1611276 ~ 1636199 (-)

Expression


Co-expression Network