LOC110496997 (LOC106595477)


Basic Information

Item Value
gene id LOC110496997
gene name LOC106595477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 1285255 ~ 1312938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981997.1
TCCCCCAGTACCACATGCTGTCTGGCTGCTACTGGGGGTTCAACAATAGCTCAGTCCTACTGCCCCAGAGACCACAGCCCGAGCAGAGTAGAGCACAGATAAGCAGAGAGAGACCATGTTGGGATAGGATCTAGTCTGTTACAAGATTACTCTGAGGcccagagtagagcagaacagagtagaacagactagagaagagaagagcagagtagaacagggaagagaacagagcaggtTAGAGGACTCCAACTGCCGTTTGGTTGACAACACAACCCAGGTTATAAAGATATAAACAGTCGTAGAAAATATAAACCGTCATATTATTTAACCGATGTTTAATTTGAAGGTACACCCTCTTCTTGTTGGGATTCTGGTTGTTTTAGCAGGTTCCGCCAGGTGTTCAGAAGATGAGACACGTCTGGTTAAAACCCTGTTCACCGGCTATAACAAGGTGGTCCGCCCTGTCAATCACTTCAGAGATCCGGTGGTGGTGACCGTAGGCTTGCAGCTCATCCAGCTCATTAGTGTGGATGAAGTCAATCAAATTGTGACCAGTAATGTGCGTCTGAAACAGATATGGGAGGACGTGAATCTGAAGTGGAACCCTGATGATTATAGTGGAATTAAGAAGATCAGAATCCCTTCTACAGACATCTGGCGTCCCGACCTCGTGCTCTATAACAATGCAGATGGAGACTTTGCAATTGTCCATGAGACCAAGGTGCTGCTGGAGCACACAGGTCTGATCACCTGGAACCCTCCGGCCATCTTTAAGAGCTACTGTGAGATCATTGTGCTTCACTTCCCCTTCGACCTGCAGAACTGCAGTATGAAGCTGGGGACATGGACCTACGACGGCAACCTGGTAGTGGTCAACCCGGACAACGACCGGCCTGACCTGAGTAACTTCATGGAGAGTGGTGAGTGGGTGATGCAGGACTATAGGAGCTGGAAGCACTGGGTGTACTATGCCTGCTGCCCTGACACGCCCTACCTGGATATCACCTACCACTTCCTGATGCTGAGGCTGCCTCTCTACTTCATCGTCAACGTCATCATCCCCTGCATGCTGTTCTCCTTCCTGACTGGACTGGTCTTCTACCTCCCCACTGACTCTGGTGAGAAGATGaccctgtctatctctgtcctgctgtctctgactgtgtttctgctggtcatcGTGGAGCTCATCCCCTCCACCTCCAGTGCGGTGCCTCTCATTGGGAAGTACATGCTCTTCACCATGGTCTTCGTCATAGCCTCCATCGTCATCACCGTCATCGTCATCAACACACACCACCGCTCTCCCAGTACACACACAATGCCCCAGTGGGTCCGCAAGATTTTCATCGACACCATCCCCAATTTCATGTTCTTCTCGACTATGAAGCGTCCATCCAGGGACAGGCAGGAGAAGAGGATCCACCCGGCTGACTTTGACATCTCCGACATCTCGGGCAAGCCTGCCCCTGCCTCTGTCACCTTCCAGTCCCCCATCACCAAGAACCCGGACGTCCGCAGCGCCATCGAGGGGGTCAAGTACATCGCAGAGACCATGAAGTCTGATGAAGAGTCCAACAATgCTGCTGAGGAGTGGAAGTTTGTAGCCATGGTCCTGGATCACATCttgctgtgtgtgttcatggctGTGTGTATCATCGGCACCATGGGAGTGTTCGCTGGACGCCTCATTGAGCTGAGCATGCAGGGTTAAAGGAGAGGCCATAGCCAGAGTCACCGTGCTCTGGCCACACCCTGGTTCTCCTGCTCGCTCTGACACCTGTCTGCTGTGCCTCTACCCCGACTCATCTGGAAATGACAACCAATCGATTGATTGGATCGTGGATTGAATGTAACTGGTCCAGTGAGGTGTTGTTATTGTAGCTTCTTTTCTGCATGGAGATTACAGTTGAAAATATGGACATTCACAGCACTCGGTGTTGAGAAGGTGTCCCGCTGTCAGCTGTCTGTGACTTGATGGATCGTATTTAAGGAACGATGGTTAACCTACCTAACGAGGTGATTCCTTTATTTCTAACCATCCTTCATCATGTGCAACGAAGGATGCAGAGTATGTTGGTTTAACAAACTCTGCATAATGGCTCTGATTGGGAGCACTCTGGCACTCTTATGGAACTCTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGGTCACATTATGGCACTGTGGATGAGGGAGATCACATTATGGCACTGTGGATGAGGGAGATGACATTATGGCACTGTGGATGAGGGAGATGACATTATGGCACTGTGGATGAGGGAGGTCAAATTATGGCACTGTGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGCTCACATGATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGCACTGTGGATGAGGGAGGTCAAATTATGGCACTGTGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGATCACATTATGGTACTGTGGATGACGGAGATCACATTATGGCACTGGGGATGAGGGAGGTCACATTATGGTACTGTGGATGAGGGAGCTCACATTATGGTACTGTGGATGACGGAGATCACAAGCAGCTGGTAATGCATCTCGCCGTTGTTGCATGATCATTATTGACGATCAGAAGATCAGTTTGAATGAGTTTCTCAACCTTGATTTAGAAGTGGGCCTGTCTTGTCAATAAAGATGACAGTGCAGGGGCTTCTGGGCAACTACATGATGTTTTATCTTGTCCGATGTTAGggttttctctcctccttctgccAAATGTCATCACGGTTCTATTTTTAGATTTGGTTAAATGTCAAAATAAAATCTACTTCCA

Function

NR:

description
PREDICTED: acetylcholine receptor subunit alpha

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0007274 neuromuscular synaptic transmission biological_process
GO:0003428 chondrocyte intercalation involved in growth plate cartilage morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0043113 receptor clustering biological_process
GO:0086009 membrane repolarization biological_process
GO:0006812 cation transport biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0042166 acetylcholine binding molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04803 CHRNA1; nicotinic acetylcholine receptor alpha-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981997.1 True 2961 mRNA 0.49 10 1285255 1312938

Neighbor

gene id symbol gene type direction distance location
LOC118965204 LOC106592365 coding downstream 258 1247650 ~ 1284997 (-)
LOC110495354 LOC106593697 coding downstream 37936 1223413 ~ 1247319 (-)
LOC118936672 LOC106596203 coding downstream 137254 1121826 ~ 1148001 (-)
LOC110517159 LOC106596293 coding downstream 308585 963454 ~ 976670 (-)
LOC110495363 LOC106574929 coding downstream 388397 891792 ~ 896858 (-)
LOC110496970 LOC106574861 coding upstream 1703 1314641 ~ 1322859 (-)
LOC110495433 LOC106574863 coding upstream 9490 1322428 ~ 1326256 (-)
LOC110495420 LOC106574901 coding upstream 44294 1357232 ~ 1362903 (-)
LOC110495424 ap1s2 coding upstream 55246 1368184 ~ 1384631 (-)
LOC110495418 LOC106594797 coding upstream 107102 1420040 ~ 1434550 (-)
G567159 NA non-coding downstream 31257 1253277 ~ 1253998 (-)
G567100 NA non-coding downstream 84944 1144971 ~ 1200311 (-)
G567098 NA non-coding downstream 142603 1141821 ~ 1142652 (-)
G567095 NA non-coding downstream 152751 1131798 ~ 1132504 (-)
G567179 NA non-coding upstream 7394 1320332 ~ 1320787 (-)
G567190 NA non-coding upstream 39126 1352064 ~ 1352833 (-)
G567195 NA non-coding upstream 42543 1355481 ~ 1355703 (-)
G567192 NA non-coding upstream 42917 1355855 ~ 1356170 (-)
G567147 NA other downstream 77978 1203875 ~ 1207277 (-)
LOC110528715 LOC106594730 other downstream 450564 831066 ~ 842688 (-)
LOC110487686 bora other downstream 582324 700093 ~ 708877 (-)
LOC110519328 LOC106574843 other downstream 743549 527767 ~ 541749 (-)
G567242 NA other upstream 166414 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 258421 1571359 ~ 1571804 (-)
LOC110527180 LOC106575808 other upstream 299930 1611276 ~ 1636199 (-)
LOC118936344 LOC106574915 other upstream 734843 2047781 ~ 2055865 (-)
G567609 NA other upstream 768322 2081260 ~ 2083338 (-)

Expression


Co-expression Network