LOC110527180 (LOC106575808)


Basic Information

Item Value
gene id LOC110527180
gene name LOC106575808
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 1611276 ~ 1636199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982045.1
GCGCAGCCTCGCTGTCACAGGACTACCGCCTTTCTCCAGGGAAGAAACAGTTTTTGGGGGGGGCTGGCTACGGTCTCTACGTTGTAGCGTCGGGACACTGACGATTTAACATCGGGCATAGCATCAACACGGGCTCTTCTTGTATGGTTAGATGCCGGTCTGTGACTCTGCTAAACAGTAACCATGGCCACAGTAACCATTGCCCTCCTGTCCTAAGATCAGACTCCAGTggatgttttgaggaaaaagaaGATGGAGGATCTTTGCTCGGAGCATGTAGCTGACCTTCCTCAGAATGGGGGAggtagtggaggaggaagaggtggtggagagggggTCAGAAAGGTAGAGAACACTGCCACCCAGCTGATTGCAAGCGAGGCCTCACGCATCAGCTCTCCTGGCCAGGCTAATCAGAAACCAAGCCTTTCACATATGATAACTATCCCAGCGTCCCCCACCATGGTCAGTCCCAGCGCCGAGGCTCCAGAAGGGGTGGCTGTCAAGGTGGCTGCCACCGTGCTTCAGCCTCTCTGTCTGGGGGACAGTCCTGTGATGCTGCCCATCCACCCCCTCCAACAGATGGCTGGAGGAAACCCTCCCCAGGGGATCCCTCCGTACCTCCTGACCCACCAGGGGCCTCTCTCCCTGGGCTCCCTCTCCCAAGGCCCtggtctctccctgcctctggtCCTGGAGCAGCATGTGTTCCAGCATCTGAACACCATGGGAGCAATGCTCCAGCAGACTCCCCCTTGCCCTTCCCTGTCCTTCCTGCAGAACAATCTGCTGTGCCACACCCAACCTCAGACCTCTTCCATGGCTTCGTTGGCCTTCTGCCAGCCTCCAGCCCTGGATCAGAAACTACCTGGACCTCCAGCTCAGGACCCAGgTATTCATGCCATCCTCCAGAACCCGGCATTCGCTGCCCTCATACAGGACCTGTTTTCTGCACAGACCAACCCCAACTCCTCTTCCTGTCACCCAGCGGGGTCAACCCCAACTGACCCCTTTGCTTCAGCCTCGTTCCCCCCATCCCAACCCcaacctccacccctctcctaccCCTACAGCTCCCCGCTAGCCCCCCTGGTACCCCCTGCCACCCTCCTGGTCCCCTACCCTGTCATTGTTCCTCTCCCTGtgcctctacccatccctctccctatccccgtCCCACAGAGCCAGGAGTCCAAAGGATTCTCTGACCCCTCTAAACCAGCCTGTATGGTGACTAAAAGCACACAGACTAACTATGAGGAGATCGTCAGTCCTCCACCACACGGTAACATTATGACTCTTTACCCTCCATCGTCAATGGcctctctgtcctctgttgccATGGTCCCCGAGGGGGAGGTGCTTGACCTATCAGTGAAATCCCCTCCCATAATACAACCAAAGCAGGAAATGGCATTTCAACAACACGATGACACTGTCCTCGACCTGTCTGTAGCTAGTAAACAGAAAAGAAAAGAGCGTCCTTCATCGCGGGACTGGCACACTTCTTCCGAGGGCACTACTACAGCTTGGCTCCCTTCACCCGAGGGCACTACATCTGTTTCTCTGGAGGTCTTAAAGCCTGCGGAGTGCACTCAGAAGCTTCACCACCACCCGAGCCTGTTGAACGGTGTAACCCATGTAGAATTCAGTAGACGGCGTCAGTGGGCGGTTGTGGATGGAGGTGGGAGCGGTAATAGACCCAGCAGCGAGCCCAagagcagtagcagcagcggtaGCTCCAACTTTGAGATCTTTCACACCTCTCAAACAGCCAAAGTCATCGTGGCGGTCAAAGACGCGATCCCCACCACCGCCATCTTCTGTGGGAAGATCAAGTCTCTCTCAGGGCTGTCCAGTAAGAGCCTGTCTATTAAACAACACGACTCCTCCGGCCACACGGGGGCGCTGTTACATCAGTGTTACggttctctgcctctaaccagaGGACACCATGTGGTGGAGCAGAAGGACCCTAACCTCCCCAGGAACAGACAGGCCATCAAACTGAAGAAGGTCAGTTCACAGGAGATCCACATCCTCCCCATCAAGAAGCAACGTCTGGCTGCCTTCTGCCCCAGGAAGTAGAgagttagcctggtcccagatctgtttgtactgtcTTGCAGATGTGGGACCAGGCTGGAGCGTGAAGTGTCATTGTAGAAGTGGGATCGAATCCCGGGTCAGACAG
>TU645905
GCTGGCTACGGTCTCTACGTTGTAGCGTCGGGACACTGACGATTTAACATCGGGCATAGCATCAACACGGGCTCTTCTTGTATGGTTAGATGCCGGTCTGTGACTCTGCTAAACAGTAACCATGGCCACAGTAACCATTGCCCTCCTGTCCTAAGATCAGACTCCAGTggatgttttgaggaaaaagaaGATGGAGGATCTTTGCTCGGAGCATGTAGCTGACCTTCCTCAGAATGGGGGAggtagtggaggaggaagaggtggtggagagggggTCAGAAAGGTAGAGAACACTGCCACCCAGCTGATTGCAAGCGAGGCCTCACGCATCAGCTCTCCTGGCCAGGCTAATCAGAAACCAAGCCTTTCACATATGATAACTATCCCAGCGTCCCCCACCATGGTCAGTCCCAGCGCCGAGGCTCCAGAAGGGGTGGCTGTCAAGGTGGCTGCCACCGTGCTTCAGCCTCTCTGTCTGGGGGACAGTCCTGTGATGCTGCCCATCCACCCCCTCCAACAGATGGCTGGAGGAAACCCTCCCCAGGGGATCCCTCCGTACCTCCTGACCCACCAGGGGCCTCTCTCCCTGGGCTCCCTCTCCCAAGGCCCtggtctctccctgcctctggtCCTGGAGCAGCATGTGTTCCAGCATCTGAACACCATGGGAGC

Function

NR:

description
retinoic acid-induced protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982045.1 False 2194 mRNA 0.56 4 1611276 1636199
TU645905 True 672 TUCP 0.57 2 1612868 1636137

Neighbor

gene id symbol gene type direction distance location
LOC110496987 LOC106600438 coding downstream 59121 1482291 ~ 1552155 (-)
LOC110517469 LOC106574677 coding downstream 148666 1435527 ~ 1462610 (-)
LOC110495418 LOC106594797 coding downstream 176726 1420040 ~ 1434550 (-)
LOC110495424 ap1s2 coding downstream 226645 1368184 ~ 1384631 (-)
LOC110495420 LOC106574901 coding downstream 248373 1357232 ~ 1362903 (-)
LOC118965205 NA coding upstream 1809 1638008 ~ 1642732 (-)
LOC110527182 LOC106575851 coding upstream 6592 1642791 ~ 1666740 (-)
LOC118965206 LOC106593605 coding upstream 175484 1811683 ~ 1814154 (-)
obi1 LOC106575007 coding upstream 182500 1818699 ~ 1827488 (-)
LOC110516345 LOC106575008 coding upstream 337793 1973992 ~ 2005500 (-)
G567322 NA non-coding downstream 30733 1580332 ~ 1580543 (-)
G567320 LOC106613431 non-coding downstream 36310 1574631 ~ 1574966 (-)
G567319 NA non-coding downstream 36792 1574135 ~ 1574484 (-)
G567266 NA non-coding downstream 73705 1536398 ~ 1537571 (-)
G567263 NA non-coding downstream 83503 1527137 ~ 1527773 (-)
G567350 NA non-coding upstream 11091 1647290 ~ 1647682 (-)
G567354 NA non-coding upstream 45631 1681830 ~ 1682042 (-)
G567364 NA non-coding upstream 83403 1719602 ~ 1719802 (-)
G567365 NA non-coding upstream 84101 1720300 ~ 1720520 (-)
G567318 LOC106592056 other downstream 39472 1571359 ~ 1571804 (-)
G567242 NA other downstream 131227 1479352 ~ 1480049 (-)
LOC118965204 LOC106592365 other downstream 360993 1247650 ~ 1284997 (-)
G567147 NA other downstream 403999 1203875 ~ 1207277 (-)
LOC110528715 LOC106594730 other downstream 776585 831066 ~ 842688 (-)
LOC118936344 LOC106574915 other upstream 411582 2047781 ~ 2055865 (-)
G567609 NA other upstream 445061 2081260 ~ 2083338 (-)
G567651 NA other upstream 533219 2169418 ~ 2170232 (-)
G567653 NA other upstream 538023 2174222 ~ 2176139 (-)
G567677 NA other upstream 584889 2221088 ~ 2223215 (-)

Expression


Co-expression Network