XLOC_024826


Basic Information

Item Value
gene id XLOC_024826
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 35102125 ~ 35139520 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049425
AGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGTGGAGAGCGCGCTTAAGCTTATTTCCGACACATTAGAACccaaaggctcttttaagagccacctCAGTCTATCATACGAAGGAGATTTTCTTTTTACCAGTACTTATACATGTAGTTGAGTCAACaagaattgtttaaaaatatttcgtATGTTTACTGAACTTGGAAGTTTATAAAGATACAATTAAGTCTCATTTTAGTTACTTAATTTTGTTAATTCTTTGAATGCAATAATGTGTAATATATGTAGATTTTTAACTTG
>TCONS_00048895
GCATTATTCTTCAACACCAAGAGTAATTAGCTGTTCAGTAATAATGGCAAGAACCAAGCAGACCGCCCGTAAATCTACTGGAGGCAAAGCGCCGAGGAAACAGCTTGCCACTAAAGCTGCCCGTAAGAGCGCTCCCGCCACCGGTGGAGTCAAGAAGCCTCACCGCTACAGGCCTGGCACCGTGGCTCTGCGAGAAATCCGCCGCTATCAAAAGTCCACTGAGCTGCTGATCCGCAAACTGCCCTTCCAGCGTCTGGTCCGAGAAATCGCTCAGGATTTCAAGACAGATCTGCGCTTCCAAAGCTCCGCTGTCATGGCCCTGCAGGAGGCCAGCGAGGCTTATCTGGTCGGTCTGTTCGAGGACACCAATCTGTGCGCCATCCACGCCAAGAGGGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGTGGAGAGCGCGCTTAA
>TCONS_00048911
ATGGCAAGAACCAAGCAGACCGCCCGTAAATCCACTGGGGGTAAAGCCCCGAGGAAACAACTTGCTACTAAAGCTGCCCGCAAGAGCGCTCCCGCCACCGGTGGCGTCAAGAAGCCTCATCGCTACAGGCCCGGCACCGTGGCTCTGCGTGAGATCCGCCGCTACCAGAAGTCCACTGAGCTGCTGATCCGCAAACTGCCCTTCCAGCGCCTGGTTCGTGAAATCGCTCAGGACTTCAAGACCGATCTGCGTTTCCAGAGCTCCGCTGTCATGGCCCTGCAGGAGGCCAGCGAGGCTTATCTGGTAGGTCTTTTTGAGGACACTAACCTGTGCGCCATCCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGCGGAGAGCGCGCTTAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0009799 specification of symmetry biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0039019 pronephric nephron development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000112375 ENSDARG00000112647

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049425 False 307 lncRNA 0.35 2 35102125 35139170
TCONS_00048895 False 454 mRNA 0.57 1 35102371 35102824
TCONS_00048911 True 411 mRNA 0.60 1 35139110 35139520

Neighbor

gene id symbol gene type direction distance location
XLOC_024825 zgc:162611 coding downstream 452 35097162 ~ 35101673 (-)
XLOC_024824 kif15 coding downstream 6996 35068166 ~ 35095129 (-)
XLOC_024822 si:dkey-108k21.19 coding downstream 54287 35047454 ~ 35047838 (-)
XLOC_024821 hist1h4l coding downstream 56011 35045803 ~ 35046114 (-)
XLOC_024820 zgc:114046 coding downstream 56875 35044524 ~ 35045250 (-)
XLOC_024841 si:ch211-113a14.19 coding upstream 840 35140360 ~ 35140746 (-)
XLOC_024842 si:dkey-261m9.12 coding upstream 2008 35141528 ~ 35142127 (-)
XLOC_024843 hist1h4l coding upstream 3529 35143049 ~ 35143360 (-)
XLOC_024844 hist1h2a3 coding upstream 4714 35144234 ~ 35144620 (-)
XLOC_024845 si:dkey-261m9.19 coding upstream 6026 35145546 ~ 35145920 (-)
XLOC_024819 NA non-coding downstream 60015 35002155 ~ 35042110 (-)
XLOC_024818 NA non-coding downstream 122567 34975083 ~ 34979558 (-)
XLOC_024816 NA non-coding downstream 163994 34933831 ~ 34938131 (-)
XLOC_024813 NA non-coding downstream 378149 34672068 ~ 34723976 (-)
XLOC_024811 NA non-coding downstream 458921 34641440 ~ 34643204 (-)
XLOC_024851 NA non-coding upstream 131758 35271278 ~ 35276350 (-)
XLOC_024853 NA non-coding upstream 173356 35312876 ~ 35313623 (-)
XLOC_024859 NA non-coding upstream 595531 35735051 ~ 35735523 (-)
XLOC_024860 NA non-coding upstream 603479 35742999 ~ 35744148 (-)
XLOC_024861 NA non-coding upstream 744057 35883577 ~ 35885483 (-)

Expression


Co-expression Network