Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110518946 |
| gene name | LOC106574742 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 5981289 ~ 5990655 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036982199.1 | False | 4467 | mRNA | 0.48 | 12 | 5981289 | 5990313 |
| XM_036982198.1 | False | 4651 | mRNA | 0.48 | 12 | 5981289 | 5990655 |
| TU651060 | True | 1135 | lncRNA | 0.39 | 1 | 5981309 | 5982443 |
5,970,000
5,972,000
5,974,000
5,976,000
5,978,000
5,980,000
5,982,000
5,984,000
5,986,000
5,988,000
5,990,000
5,992,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495521 | tmem131 | coding | downstream | 12408 | 5936988 ~ 5968881 (-) |
| LOC110527206 | pcid2 | coding | downstream | 160862 | 5795586 ~ 5820427 (-) |
| LOC110517309 | LOC106575750 | coding | downstream | 244701 | 5731912 ~ 5736588 (-) |
| LOC110512982 | creg1 | coding | downstream | 252829 | 5725332 ~ 5728460 (-) |
| LOC118965218 | cd3z | coding | downstream | 256095 | 5712328 ~ 5725194 (-) |
| LOC110527210 | LOC106575700 | coding | upstream | 516 | 5991171 ~ 5994784 (-) |
| LOC118965224 | NA | coding | upstream | 14702 | 6005357 ~ 6016586 (-) |
| LOC118965223 | LOC106575703 | coding | upstream | 14713 | 6005368 ~ 6008806 (-) |
| LOC110528729 | ipo5 | coding | upstream | 31469 | 6022124 ~ 6039134 (-) |
| LOC110527215 | LOC106575668 | coding | upstream | 48458 | 6039113 ~ 6041987 (-) |
| G571177 | NA | non-coding | downstream | 45880 | 5935185 ~ 5935409 (-) |
| G571129 | LOC100136391 | non-coding | downstream | 78699 | 5895015 ~ 5902590 (-) |
| G571138 | NA | non-coding | downstream | 130244 | 5850631 ~ 5851045 (-) |
| G571133 | NA | non-coding | downstream | 145163 | 5835185 ~ 5836126 (-) |
| G571123 | NA | non-coding | downstream | 148237 | 5824802 ~ 5833052 (-) |
| G571191 | NA | non-coding | upstream | 18394 | 6009049 ~ 6009295 (-) |
| G571197 | NA | non-coding | upstream | 62759 | 6053414 ~ 6053648 (-) |
| G571199 | NA | non-coding | upstream | 65738 | 6056393 ~ 6057192 (-) |
| G571203 | NA | non-coding | upstream | 75759 | 6066414 ~ 6066717 (-) |
| G571209 | NA | non-coding | upstream | 87861 | 6078516 ~ 6078751 (-) |
| G571076 | NA | other | downstream | 204049 | 5766818 ~ 5777240 (-) |
| G569846 | NA | other | downstream | 562806 | 5417307 ~ 5418483 (-) |
| LOC110521097 | pir | other | downstream | 744485 | 5222340 ~ 5253269 (-) |
| G569728 | LOC106565892 | other | downstream | 916203 | 5062308 ~ 5065086 (-) |
| G571160 | LOC106575668 | other | upstream | 50513 | 6041168 ~ 6050002 (-) |
| G571166 | LOC100380696 | other | upstream | 100631 | 6091286 ~ 6111137 (-) |
| LOC110495631 | LOC106575789 | other | upstream | 859812 | 6850467 ~ 6863766 (-) |
| G571538 | NA | other | upstream | 1036045 | 7026700 ~ 7031863 (-) |
| G571637 | NA | other | upstream | 1324573 | 7315228 ~ 7316077 (-) |
