LOC110495535 (tuba8l2)


Basic Information

Item Value
gene id LOC110495535
gene name tuba8l2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 6207401 ~ 6220777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982217.1
ACGGTCTAAAATAACCAACTCCGCCTAACCGGAGCACCGGGCCTTGTAAAACGAACTCGACCTATGAGAGAAGAGGGAGTGTCCAAAACTCCACCCCCGCCCTTCGCAGTTTATAAAAACAGATTGCAGTAACACACGCAGTTAAAACATACTCACGGAGACCCCATTATAGGTTCACTGTGAGAGGTTATACCACCAACACTTTTATTTTTCTACGGAAACGAAGACAAACAGAATCAAAATGCGTGAGTGTATCTCTGTGCATGTGGGTCAGGCTGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCACGGGATCCAGCCGGACGGCACCATGCCTAACAACAAGGCGGTCGGTAGCACTGACGACTCCTTCACCACGTTCTTCAGCGCCACGGGCATCGGGAAATACGTACCCCGCGCCATCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGGACAGGTACCTACCGCCAGCTGTTTCACCCCGAGCAGCTGATCTCAGGGAAGGAGGACGCAGCCAATAACTATGCCCGTGGCCACTACACTATCGGCAAGGAGATCATTGACCAAGTGCTGGACAGGATCCGTAAACTGGCTGACCAGTGTACGGGGCTCCAAGGTTTCTTGGTCTTCCACAGCTTCGGAGGAGGTACCGGTTCTGGTTTCACCTCCCTGCTCATGGAGCGTCTCTCAGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATATACCCTGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTCGACAATGAGGCCATCTACGACATCTGCCGTAGAAACCTGGACATTGAGCGCCCCTCTTACACCAACCTCAACAGGCTCATCAGCCAGATTGTCTCCTCCATCACAGCCTCTCTCCGCTTCGATGGTGCCCTTAACGTGGACCTGACAGAGTTTCAGACCAACCTGGTGCCTTACCCCCGCATCCACTTTCCCCTGGCCACCTATGCCCCTGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTTTCTGTGGCTGAGATCACCAACTCCTGCTTCGAGCCCGCCAACCAGATGGTAAAGTGCGACCCTCGCCACGGTAAGTACATGGCGTGCTGTCTGCTGTACCGCGGAGACGTGGTGCCCAAGGATGTCAACGTGGCCATCGGCAACATCAAGACAAAGCGAAGCATCCAGTTCGTGGACTGGTGCCCTACAGGTTTCAAAGTGGGCATCAACTACCAGCCACCCACTGTGGTGCCAGGGGGTGACCTGGCCAAGGTCCAGAGAGCTGTGTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCGCGTCTCGACCACAAGTTTGACCTGATGTATGCCAAGCGGGCATTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAGGACTATGAAGAGGTTGGAATCGACTCATttgaggaggacgaggagggagaggagtatTAGAAGAGTTCAAAGGAGGGATATGTCCTCGGTCGGCTTACGTATCACTGAGAGATAGAACTGCCTTTACTTGACCATGAAGTGGGGAACGGCCTGCTCCTTCCCTTGTCGAAAGTCATCAATCGTGTTTTCTTCACCAAAGACCCCACAGCCATCCATGTTTGACACTATTTTCCCAGGTTGACTATGGAACCATGCAGAACCTTGAAGATTAAGCTGTCTCCCATAAATGTTTCCTTTAAGTTCATGGTACTTCTGTGCGTTCAGATCTATCCTAAACACTAAAGTTACTGCCAATCAGAAAACAAACTAGCCAACTAAACCCCATGGTGTTGGGTCTTAATGAATGTAATTCAGTAACAGTCTTGGAGGATTATTTTGCATTGCATGTTAAGTTACCCCAAAATAATTTATTGGTTTTATCCCTACAGATTGTATTATTTTCTTTGCCATGTCTTATTTTACGAGTTATCACATCAGGTTACTGTTGTGGCTGTATCCCCTCCTTTGTAAATAAAGTTTTATCTCAgttaaa
>XM_036982218.1
TGTCCTCCTCACAGGGAGACCCTGCGTGAGTGTATCTCTGTGCATGTGGGTCAGGCTGGAGTCCAGATGGGCAACACCTGTTGGGAGCTGTACTGCCTGGAGCACGGGATCCAGCCGGACGGCACCATGCCTAACAACAAGGCGGTCGGTAGCACTGACGACTCCTTCACCACGTTCTTCAGCGCCACGGGCATCGGGAAATACGTACCCCGCGCCATCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGGACAGGTACCTACCGCCAGCTGTTTCACCCCGAGCAGCTGATCTCAGGGAAGGAGGACGCAGCCAATAACTATGCCCGTGGCCACTACACTATCGGCAAGGAGATCATTGACCAAGTGCTGGACAGGATCCGTAAACTGGCTGACCAGTGTACGGGGCTCCAAGGTTTCTTGGTCTTCCACAGCTTCGGAGGAGGTACCGGTTCTGGTTTCACCTCCCTGCTCATGGAGCGTCTCTCAGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATATACCCTGCTCCCCAGGTGTCCACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTCGACAATGAGGCCATCTACGACATCTGCCGTAGAAACCTGGACATTGAGCGCCCCTCTTACACCAACCTCAACAGGCTCATCAGCCAGATTGTCTCCTCCATCACAGCCTCTCTCCGCTTCGATGGTGCCCTTAACGTGGACCTGACAGAGTTTCAGACCAACCTGGTGCCTTACCCCCGCATCCACTTTCCCCTGGCCACCTATGCCCCTGTCATCTCAGCCGAGAAGGCCTACCACGAGCAGCTTTCTGTGGCTGAGATCACCAACTCCTGCTTCGAGCCCGCCAACCAGATGGTAAAGTGCGACCCTCGCCACGGTAAGTACATGGCGTGCTGTCTGCTGTACCGCGGAGACGTGGTGCCCAAGGATGTCAACGTGGCCATCGGCAACATCAAGACAAAGCGAAGCATCCAGTTCGTGGACTGGTGCCCTACAGGTTTCAAAGTGGGCATCAACTACCAGCCACCCACTGTGGTGCCAGGGGGTGACCTGGCCAAGGTCCAGAGAGCTGTGTGCATGTTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCGCGTCTCGACCACAAGTTTGACCTGATGTATGCCAAGCGGGCATTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGGGAAGACATGGCTGCCCTGGAGAAGGACTATGAAGAGGTTGGAATCGACTCATttgaggaggacgaggagggagaggagtatTAGAAGAGTTCAAAGGAGGGATATGTCCTCGGTCGGCTTACGTATCACTGAGAGATAGAACTGCCTTTACTTGACCATGAAGTGGGGAACGGCCTGCTCCTTCCCTTGTCGAAAGTCATCAATCGTGTTTTCTTCACCAAAGACCCCACAGCCATCCATGTTTGACACTATTTTCCCAGGTTGACTATGGAACCATGCAGAACCTTGAAGATTAAGCTGTCTCCCATAAATGTTTCCTTTAAGTTCATGGTACTTCTGTGCGTTCAGATCTATCCTAAACACTAAAGTTACTGCCAATCAGAAAACAAACTAGCCAACTAAACCCCATGGTGTTGGGTCTTAATGAATGTAATTCAGTAACAGTCTTGGAGGATTATTTTGCATTGCATGTTAAGTTACCCCAAAATAATTTATTGGTTTTATCCCTACAGATTGTATTATTTTCTTTGCCATGTCTTATTTTACGAGTTATCACATCAGGTTACTGTTGTGGCTGTATCCCCTCCTTTGTAAATAAAGTTTTATCTCAgttaaa

Function

symbol description
tuba8l2 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a).

NR:

description
tubulin alpha-4A chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982217.1 False 2123 mRNA 0.51 4 6207401 6215010
XM_036982218.1 True 1903 mRNA 0.52 4 6207401 6220777
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Neighbor

gene id symbol gene type direction distance location
LOC110495536 stk16 coding downstream 814 6197779 ~ 6206587 (-)
mnx2b LOC106575710 coding downstream 56884 6145010 ~ 6150517 (-)
LOC110527222 LOC106575709 coding downstream 68261 6131292 ~ 6139140 (-)
LOC118936676 LOC106575668 coding downstream 157396 6046690 ~ 6050005 (-)
LOC110527215 LOC106575668 coding downstream 165414 6039113 ~ 6041987 (-)
LOC110495534 LOC106574868 coding upstream 4511 6225288 ~ 6229997 (-)
LOC118965373 LOC106574879 coding upstream 44001 6264778 ~ 6265943 (-)
LOC110495540 LOC105019723 coding upstream 55468 6276036 ~ 6288259 (-)
LOC110495541 NA coding upstream 67637 6288414 ~ 6298162 (-)
LOC110497021 LOC106575646 coding upstream 77668 6298445 ~ 6319837 (-)
G571230 NA non-coding downstream 24470 6182732 ~ 6182931 (-)
G571228 NA non-coding downstream 33508 6173658 ~ 6173893 (-)
G571227 LOC100194703 non-coding downstream 34529 6172222 ~ 6172872 (-)
G571211 LOC100380696 non-coding downstream 119637 6086111 ~ 6087764 (-)
G571210 NA non-coding downstream 127680 6079482 ~ 6079721 (-)
G571279 NA non-coding upstream 20608 6241385 ~ 6243230 (-)
G571287 NA non-coding upstream 32107 6252884 ~ 6253367 (-)
G571289 NA non-coding upstream 40653 6261430 ~ 6261928 (-)
G571293 pwp2 non-coding upstream 53193 6273970 ~ 6274302 (-)
G571166 LOC100380696 other downstream 96264 6091286 ~ 6111137 (-)
G571160 LOC106575668 other downstream 157399 6041168 ~ 6050002 (-)
G571129 LOC100136391 other downstream 304811 5895015 ~ 5902590 (-)
G571076 NA other downstream 430161 5766818 ~ 5777240 (-)
G569846 NA other downstream 788918 5417307 ~ 5418483 (-)
LOC110495631 LOC106575789 other upstream 629690 6850467 ~ 6863766 (-)
G571538 NA other upstream 805923 7026700 ~ 7031863 (-)
G571637 NA other upstream 1094451 7315228 ~ 7316077 (-)
LOC110496980 zranb3 other upstream 1115733 7335591 ~ 7413148 (-)
G571715 NA other upstream 1252591 7473368 ~ 7473641 (-)

Expression

LOC110495535(tuba8l2) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 800.
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LOC110495535(tuba8l2) Expression in each Bioproject

Bar chart with 21 bars.
LOC110495535(tuba8l2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network