LOC110491192 (orc4)


Basic Information

Item Value
gene id LOC110491192
gene name orc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7729466 ~ 7734571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982345.1
TGCTAACTTGGTGGCGGTGACTGTTGCCACCATGAGTAAACGAAAAGTGAAGGAAACACACATGCCAGTCGGCGAATGTATTTCTCAGGTTCAGATGATATTGAGGGAGAGATTCTGTCATCAGAGACTTCCTGAAAAGCCAGTGGGAATGGAGTCACAACACAAACACCTGCTGGAGCTGCTGAGGAGGACAGCTGTCCATGGAGAGAGTAATTCTGTACTCATCGTTGGACCCAGAGGATCTGGGAAAACAATGCTCCTTAACTGTGTCTTGAGAGAGTTGCTGGAGGTGAAGGATGTCAATAAGAATGTGTTACCTGTCCACCTGAATGGTCTTTTACAGACTGATGATAGAATAGCGCTCAAAGAAATCACACGCCAGCTCAATCTGGAGAATGTTGTTGGAGACAAAGTGTTTGGTAGTTTTGCAGAAAACCTGGCCTTCCTTCTTGAGGCGTTAAAGAAAGGTGATCGTAGCAGCAGTCGTCCTGTCCTCTTCATTCTGGATGAGTTTGACCTGTTTGCCCACCATAAGAACCAGACTCTGCTCTACAACCTCCTGGATGTCTCCCAGTCTGCCCAGGCTCCCGTCGCTGTGATCGGCCTCACCTGCAGACTGGATGTCCTGGAGCTGCTAGAGAAGAGGGTAAAGTCCAGGTTCAGCCACAGACAGATCCACCTGCTCAGCTCCCTGAGCTTCATACAGTACCTGGACAACGTCCGCTCACAGCTCAGCCTGCCACAAGACTTCCCCGACACCAAGTTCTATGACGAGTGGAATGACAGCATCAAGACGCTATGTGAAGACCAACTAGTGGTGGACGTTTTACAAAGTCATTATAACTCCAGCAAAGACTTCCGTTCCCTGCACTTGTTACTGATGCTGGCTCTGAGCCGAGTGAGCGCATCTAAACCTGCCATCAAGCCCACTGATCTCCTGGAGGCCAGTAGAGTCTGTATGGTGGACTCTAAGGCAAACATACTTCATGGCCTGTCCATTCTTGAACTGTGCCTGATAATTGCCATGAAACACTTGAATGACATCTATGAAGGAGAGCCGTTTAACTTCCAGATGGTTCACAATGAGTTCAAGAAATTCCTGCAGAGGAAATCCCATTCTATACATAACTTTGACAAGCCAGTCGTCATAAAGGCGTTTGAACACCTGCAGCAGTTGGAGCTGATTAAGTCTATGGACAGCTCCACAGCAAAGATCCAGAAGGAGTACCAGCTGATGAAACTTTTGTTGGACCACAGCCAGATCATGGAGGCCCTGCAGAAATACCCACAATGCCCCACAGATGTTAAACAGTGGGCCATGTCTGCTTTTGGTTAAAGGTACATATTCCTCTATATTGTGTCCAGTGGGGCAGTTATGAAAGATATGGGACTGTGGCCTGGACCCTGTCCTCAAGGATAGACAATGAATGACCTAACAAATGTTTCTGCCATGTGTTCATTCCTTGTGTGTAAATGTAAATATTTGGCTGTACTTATTGAATAAAGTCATGCAATTTTTTGGGGT
>XM_036982344.1
CTCCTATTGTAGGTCCAATAATTAGGTGACCCGGAAGTGGGTCGGAGTTGTGATCGTTAAATGAGAAATGTCTTCGCAAAGATTCCAATTTCGCGCTTAGACCACTGTCATCGGGAAAAAAACTGTTGCCACCATGAGTAAACGAAAAGTGAAGGAAACACACATGCCAGTCGGCGAATGTATTTCTCAGGTTCAGATGATATTGAGGGAGAGATTCTGTCATCAGAGACTTCCTGAAAAGCCAGTGGGAATGGAGTCACAACACAAACACCTGCTGGAGCTGCTGAGGAGGACAGCTGTCCATGGAGAGAGTAATTCTGTACTCATCGTTGGACCCAGAGGATCTGGGAAAACAATGCTCCTTAACTGTGTCTTGAGAGAGTTGCTGGAGGTGAAGGATGTCAATAAGAATGTGTTACCTGTCCACCTGAATGGTCTTTTACAGACTGATGATAGAATAGCGCTCAAAGAAATCACACGCCAGCTCAATCTGGAGAATGTTGTTGGAGACAAAGTGTTTGGTAGTTTTGCAGAAAACCTGGCCTTCCTTCTTGAGGCGTTAAAGAAAGGTGATCGTAGCAGCAGTCGTCCTGTCCTCTTCATTCTGGATGAGTTTGACCTGTTTGCCCACCATAAGAACCAGACTCTGCTCTACAACCTCCTGGATGTCTCCCAGTCTGCCCAGGCTCCCGTCGCTGTGATCGGCCTCACCTGCAGACTGGATGTCCTGGAGCTGCTAGAGAAGAGGGTAAAGTCCAGGTTCAGCCACAGACAGATCCACCTGCTCAGCTCCCTGAGCTTCATACAGTACCTGGACAACGTCCGCTCACAGCTCAGCCTGCCACAAGACTTCCCCGACACCAAGTTCTATGACGAGTGGAATGACAGCATCAAGACGCTATGTGAAGACCAACTAGTGGTGGACGTTTTACAAAGTCATTATAACTCCAGCAAAGACTTCCGTTCCCTGCACTTGTTACTGATGCTGGCTCTGAGCCGAGTGAGCGCATCTAAACCTGCCATCAAGCCCACTGATCTCCTGGAGGCCAGTAGAGTCTGTATGGTGGACTCTAAGGCAAACATACTTCATGGCCTGTCCATTCTTGAACTGTGCCTGATAATTGCCATGAAACACTTGAATGACATCTATGAAGGAGAGCCGTTTAACTTCCAGATGGTTCACAATGAGTTCAAGAAATTCCTGCAGAGGAAATCCCATTCTATACATAACTTTGACAAGCCAGTCGTCATAAAGGCGTTTGAACACCTGCAGCAGTTGGAGCTGATTAAGTCTATGGACAGCTCCACAGCAAAGATCCAGAAGGAGTACCAGCTGATGAAACTTTTGTTGGACCACAGCCAGATCATGGAGGCCCTGCAGAAATACCCACAATGCCCCACAGATGTTAAACAGTGGGCCATGTCTGCTTTTGGTTAAAGGTACATATTCCTCTATATTGTGTCCAGTGGGGCAGTTATGAAAGATATGGGACTGTGGCCTGGACCCTGTCCTCAAGGATAGACAATGAATGACCTAACAAATGTTTCTGCCATGTGTTCATTCCTTGTGTGTAAATGTAAATATTTGGCTGTACTTATTGAATAAAGTCATGCAATTTTTTGGGGT

Function

symbol description
orc4 Predicted to enable DNA replication origin binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 2. Orthologous to human ORC4 (origin recognition complex subunit 4).

NR:

description
origin recognition complex subunit 4 isoform X1

GO: NA

KEGG:

id description
K02606 ORC4; origin recognition complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982345.1 False 1525 mRNA 0.47 14 7729466 7734571
XM_036982344.1 True 1627 mRNA 0.47 14 7729619 7734571

Neighbor

gene id symbol gene type direction distance location
LOC118965231 LOC106593490 coding upstream 52729 7673545 ~ 7676737 (+)
LOC110495388 mmadhc coding upstream 96591 7624474 ~ 7632875 (+)
LOC118965426 NA coding upstream 145793 7583520 ~ 7583673 (+)
LOC118965425 NA coding upstream 146517 7580087 ~ 7582949 (+)
LOC110495398 rnd3 coding upstream 205625 7504010 ~ 7523841 (+)
LOC110491194 hsf2bp coding downstream 1003 7735574 ~ 7745976 (+)
LOC110491195 NA coding downstream 12616 7747187 ~ 7748423 (+)
LOC110491196 LOC106575747 coding downstream 14835 7749406 ~ 7767337 (+)
LOC118965232 LOC106575843 coding downstream 88132 7822703 ~ 7827097 (+)
LOC110525651 LOC106575849 coding downstream 161016 7895587 ~ 7900191 (+)
G570696 NA non-coding upstream 17666 7710319 ~ 7711800 (+)
G570695 NA non-coding upstream 20145 7708192 ~ 7709321 (+)
G570683 LOC106574758 non-coding upstream 38465 7690214 ~ 7691001 (+)
G570679 NA non-coding upstream 62556 7666445 ~ 7666910 (+)
G570674 NA non-coding upstream 69143 7660122 ~ 7660323 (+)
G570731 NA non-coding downstream 51550 7786121 ~ 7787688 (+)
G570741 LOC106561090 non-coding downstream 63038 7797609 ~ 7798425 (+)
G570742 NA non-coding downstream 63564 7798135 ~ 7798834 (+)
G570743 NA non-coding downstream 68306 7802877 ~ 7804126 (+)
G570750 NA non-coding downstream 94276 7828847 ~ 7830431 (+)
G570616 NA other upstream 241868 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 288718 7438559 ~ 7440748 (+)
G570541 NA other upstream 422815 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 895172 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 963320 6761084 ~ 6767166 (+)
LOC110495467 LOC100653484 other downstream 195217 7900629 ~ 7934716 (+)
LOC110504762 LOC106573845 other downstream 279295 8008932 ~ 8017366 (+)
LOC110497026 ptprn other downstream 301101 8009587 ~ 8061480 (+)
G570827 LOC107379067 other downstream 328536 8063107 ~ 8071558 (+)

Expression


Co-expression Network