LOC110491194 (hsf2bp)


Basic Information

Item Value
gene id LOC110491194
gene name hsf2bp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7735574 ~ 7745976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984473.1
CCTTTGAGCTTGTTGGTGATTTACATACAGCtacaaacagttttttttttcaaaacaaCTTACCCGTAAATAAATGACTAAATAATTATCTAAAGAGGGTGAATTCTCACTGCAGAAACAATCAATAGTGGGGAGAGCGCGTCATTCTGGTCCATCCTAAAATGTGCAGTGCGTTTAAAATAACTGAATAATTTATCCAGGTAAAAATGCATTTGAACACGCATTTCACGATATGACGTAATGGTTGCCTACTTTTGTGATTTACATAGGACATTTGCACGTTTTCCTTGGTTCTAGATATATTTAAACATTTTGAACGGGGAGCCAAATGCGCCAGCTCTTTTACCTGAACGGAGCCAAATGAGCCGACTCTTTTACCTGAACGGATCCAAATGAGCCGGCTCTGCTCACCGAAAAGACTCGGAATGCCCATCACTAGTGGCAAGTGCACTAAACTCATCTCAAAACAAACCTCCGAGGAATAAAAAATGACTAAATTCATAGACACAAAGATGTGGGCTTTGTGCAAGAAAGGAAAGGTTGACAGCCGAGATGGCCTGGTCCAAATCAGAAAAAGAGACTTGGAGAGATTGACTACAGAGGTCATGCAGCTCCGAGAGTTCTTACCCAAAGTAGTGAATGGAGACCTGATTGAGATGCTGCAGAAAGCCTGTGCTGCAGAGACAAtgaaggAGCGCCTTGGTCAGGAGCAGGAGCAACTGAGACAGGAGTGTCTGCACCTCCGCTCTCGCCTGGACGCAGCGCAGAGCgagtgtcagaaagagagagagGAGAAGCTTGTTCTGAGGGAGCAGCTGTGGGAGAGTCGGGAGCAGCTGCAGCAGCAGGCTGAGTTCTGTACTGGGCTGGGGGCTGCCTCCTGCACCCTGCTGTGGAGCACCTCCAGTAAGGAGGAGGCAGTCAAAGACATCCTGGCTGATGGTAAGCTGCAGTCCTTCCTGAGCGTGGCGGGCCAGACCCTGGAGAGCTTTGTCAAGTCTCTGGATGGGGAGGCCAAGGCCGAGCAGCAAGACTCCAACTCCCATGAGCAGCAGTTTGTTCTGGCGCTGGCCGGAGTCGTCACCAACGTGGCGGCGGTGACGTGTGGGCGGGACTACCTGTCCAGCTCCGCCCACGTCCTCCTGGAGACTCTGATGCAGCAGCTGGAGCTCCTGAAGCCTGGGGTCTTCCCCAAACTCAAAGTGTTGATGCTGATGGCTTTGTATAATGTCAGTATCAGTGTAAAGGGACTGAAGTATATCAGGGAGTTTCCAggacttctctctctcatctggacCCTTTTGGAAGACGGGGACTCTGAGGTTTGCCTCCACGCCCTGCGGCTGCTCCAGTCAGTGCTGCTGGAGGAGGCCCTGGCGGGGCCCGGGCTGCTGCTGGACGATCCCCTTCTTCCACTGGAGCGCATACGCACGCTGGCCACCTCCAGCCGCCACCCGGCCCTGAGGCAGACGGCCCAGGAGACACTGGATGACCTGGGCTCCCTCCGCACCTCCTTCCTGGACCCCCACGGCACCTCCTCCTCTGACCAAGTACATGTATAAATACATCCAACCCAAAGTGAAACACACAGCACTAGCGACACATCCCACTcacgtgatgatgatgatgctttcCTACTGTAGAGTAAACGTTTCTCTGATTAGAGAGAGCTCTACTGAGGAGAGCTGCCATGATGCACTGTGGAAGAGGTTGGTTCCATCGTGTCCCTTTCTCGTTTTTCCCCCGGGTCCAGGGACTTAGTCAGGTTGGTTCCTATCCCACCACAGCAGATGTTCCGGGACCAGTAGAACCCCATAACTGTACATAAGGGCtccataacacattcataagccATACATAGAACATACATTAGAACTACAAAAATGGTGTATGTCAAATTAAAACGTGTTGACATGGTCCAAAGCAAGGATGACTTCTGCTTGCCATATGTTAAAGAGACGGCTTGTCTGTTTGTTTAAAACATGTATCTACTGTTGTGAGGTGAGTTGGATCTGTTTCTACCTGTTAGCCTGTTGACCTAATACCAGCTAATACCATATCAGACTCATGGCCTTATTTCATTAGGTAAAATACCTTGAGGTCAAGTAACAATAGAGGATGTTTTATTTTTGTGTGTTGTTTTCTACCATTGTTACAGACAATAAAATGTTATTCAAAACTTTTCCAAATGAACATT

Function

symbol description
hsf2bp Human ortholog(s) of this gene implicated in primary ovarian insufficiency 19. Orthologous to human HSF2BP (heat shock transcription factor 2 binding protein).

NR:

description
heat shock factor 2-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984473.1 True 2197 mRNA 0.49 8 7735574 7745976

Neighbor

gene id symbol gene type direction distance location
LOC110491192 orc4 coding upstream 1003 7729466 ~ 7734571 (+)
LOC118965231 LOC106593490 coding upstream 58837 7673545 ~ 7676737 (+)
LOC110495388 mmadhc coding upstream 102699 7624474 ~ 7632875 (+)
LOC118965426 NA coding upstream 151901 7583520 ~ 7583673 (+)
LOC118965425 NA coding upstream 152625 7580087 ~ 7582949 (+)
LOC110491195 NA coding downstream 1211 7747187 ~ 7748423 (+)
LOC110491196 LOC106575747 coding downstream 3430 7749406 ~ 7767337 (+)
LOC118965232 LOC106575843 coding downstream 76727 7822703 ~ 7827097 (+)
LOC110525651 LOC106575849 coding downstream 149611 7895587 ~ 7900191 (+)
LOC110495467 LOC100653484 coding downstream 154653 7900629 ~ 7934716 (+)
G570696 NA non-coding upstream 23774 7710319 ~ 7711800 (+)
G570695 NA non-coding upstream 26253 7708192 ~ 7709321 (+)
G570683 LOC106574758 non-coding upstream 44573 7690214 ~ 7691001 (+)
G570679 NA non-coding upstream 68664 7666445 ~ 7666910 (+)
G570674 NA non-coding upstream 75251 7660122 ~ 7660323 (+)
G570731 NA non-coding downstream 40145 7786121 ~ 7787688 (+)
G570741 LOC106561090 non-coding downstream 51633 7797609 ~ 7798425 (+)
G570742 NA non-coding downstream 52159 7798135 ~ 7798834 (+)
G570743 NA non-coding downstream 56901 7802877 ~ 7804126 (+)
G570750 NA non-coding downstream 82871 7828847 ~ 7830431 (+)
G570616 NA other upstream 247976 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 294826 7438559 ~ 7440748 (+)
G570541 NA other upstream 428923 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 901280 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 969428 6761084 ~ 6767166 (+)
LOC110504762 LOC106573845 other downstream 267890 8008932 ~ 8017366 (+)
LOC110497026 ptprn other downstream 289696 8009587 ~ 8061480 (+)
G570827 LOC107379067 other downstream 317131 8063107 ~ 8071558 (+)

Expression


Co-expression Network