LOC110491196 (LOC106575747)


Basic Information

Item Value
gene id LOC110491196
gene name LOC106575747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7749406 ~ 7767337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984399.1
ATCACCACATTGGTCATCATGACCCACTTAACGGTATGCCTGTTCGTTAAACTGCTTATAGGGAGGAGACTAGTGAGCCTCTAGTCTACTAGAAGCGTTGATGGTCTAATTCAATAAAGAGACGTTGCTGCTCAGTGTTATTGTTTGGCGTTACTGTACGCTGAGCGGCTGCTACAGCCTATTCATAGTGCAAACCTCGTGAAGACCACTTTGGCGTCACCGTGTCCAGCTCCAAGCTACCTTTCCCGCTCCACGAGAAGCGCGCGGGACAGTTGCTCGGCAACTCTGACGCAAGCTTGACGTTAATTAAGTGTGTTTTAGTTCAGTATGGCAGGAGAAGATTTCCAGCCGAGTTTGAGTTACAGAGGTTGTGTGGATTATTGCATACCAGATTTATCCCCCGTTAACAAAATATGAGGAACAAATCGTCTGTGCGCAGTTAGGGAAGTAGCCTGGATGCGCACACTGTTCTAGAACGGCGGAGGATTCCAACAACATAGGTGGATGTACTGAACTGGAGAGTTTCTGTGAAGGTTTATCCAGTCACTGGGTGCCTCTGCACCATGGTGGTTTTATCCGATGGCTCTCCCCTGAGCCAGCCATGCCCCGGGGGACCGGTTCAGGTCGGTTTCTACGAGATCATCAGGACGCTGGGGAAGGGAAACTTCGCTGTAGTTAAACTGGCTTGTCACAAAGTCACAAAAACCCAGGTGGCCATTAAAATCATTGATAAAAAGAGACTGGAGCCCTCTGACCTGAAGAAGATCTACAGAGAGGTCGAGGTGATGAAGCTCCTCAACCATCCGCACATTATCAAGCTCTATCAGGTCATGGAAACTAAGGACATGTTGTACATGGTGATGGAGTATGCCAGGAACGGAGAGATGTTTGACTACTTGTTGTCATCGGGGCGGCTGAGTGAGAGTGAGGCTCGCAGGAAGTTCTGTCAGATCCTGTCAGCGGTGGACTACTGCCACAGCAACCACATCGTCCACAGAGACCTGAAGGCTGAGAACCTTCTGCTGGACTCCAACATGGACATCAAAGTAGCAGaCTTTGGTTTTGGGAACTTCTTCAGTGAAGGACAATTTCTGTCCACCTGGTGTGGGTCCCCGCCCTACGCCGCTCCAGAGGTGTTTGAGGGGATTGAGTACGAGGGGCCTCCTCTAGACATCTGGAGTCTGGGCGTGGTGCTGTACGTGTTGGTGTGTGGCGTCCTGCCCTTTGACGGCCCCTCCCTCCCCGCGCTCAGACAGAGGGTCCGGGAGGGCCGCTTCAGAATCCCCTTCTACATGTCCCAAGACTGTGAGAACCTGGTGCGGAGGATGTTAGTAATTGAACCGGCCAAACGGATCACGGTGGCCCGGATCAAGAAGCACCGCTGGATGAAGTCGGACCCCCCGGCCACGGCAGCCCCTCCAGAGACGCCCCAGCCGACCCCTGCCCCTGATGCAGAGCCCTGTCTGGTGGAGAATTACAGCGAGCCAGTACTTGGCCTCATGCAGACCCTGGGCATCGACCGGCAGAGGACCATTGAGtctcttcaGAGCAGCAGCTACAACCACTTCTCTGCTATCTACCGTCTCATGCTGGAGAAGGTGAAAGAGCTCCGCTCCCTCAGACTGCCCCAGGGCACCGAAAAGGTGACCCCCAACCCTGACCACGACACTCTGCTACCGACCTGCATTAGTGATCAGGATCACCATGGAAACCAGGGGGAGGAGCCACAGGAAGGGGAGCTGCAAGAGGAGGGAGGGGCAGCAACCCTCTCCTTAGACCCCTCCCACAGACACACTCTGGCCGAGGTCTCTGCCAGCCTCCAGCAGTGCAGCCCATCTTGTGCTGTGGTAAACTCATCCGACCAAGCTTCCTCAGAtagtttctcctcttcctcctcttccttctctgccaGTCCCAGCCTGTCCAGCCCAATTGAGGACCCCTATATGGTACTTGTCACTACTGTGGATGGCCCTGGGACCTATAGCCCCACAGAGTCCCCCCTGGCCCTGTCCTCTACCGTGCCCAGCACTGTTGACGGCCCCTATCAGTTACTGGTCACTACCGGTCATCTGGCCCTGTCGTCCACCCTGCAGCCCCCTCCCCAGGATAGCCTCCCCGTACCCAGCTTCCAGGAGGGCCGCCGAGCCTCCGACATGGACACCGGCGCTCTAACACAAGGTCTGAGGGTGTTCCGCCAGAAGTTGAGGATGGAGGCCGGCGCCAAGGGCCTGCTGGGACTGAACAAGATGAATAGCCCCGGGGTCCGGAACGGGTGGTCCCCCCCAGCCTCTGGCTCTGCACCCTGCCCCCCTGCCTGGGGGGGGCGAGACCTGTCCCACTGTGTCCCCACCACACCACTGTCAGAGGAAGGCTTCCAGCAGCAGAAAGTGATCCAGATTCCACTGTGCCAATTCCACCCcaccacacctcttcctccacgcCACCCCACGTCTTCCTCCCCGCCACCACacctcttcctgtctcctcccgTCCCTCCTAACGTTCCCGCTCCTCCTCGTCCTCCCATTGGTCtgttctccacacacacactgtcacatgaCTTCCTCACACCCTCCCTTCAACAGAACCACTCACCACACCCACAACTACACCCACACCCACAACTACACTCACAGCTACACCCACAGCCACAACTACACTCACAACTACACCCACAGACACAACTACACCAACAACTACACTCACAACTACACCCACACTCACAACTACACCCACAACTACACCCACAGCCACAACTACACCCACAACTATACCCACAGCCACAACTACACCCACAGTCACAACTACACCCACAACTACAACCACACTCACAGCTACACTCACAACTACACCTACAGCCACAACTACAGCCACAACTACACCCACACTCACAGCTGCACTCACAGCTACACCAAAAGACACATCCACAACCACAATCCTACCTATCTCTATGCTCAGAGCAACCGCTAGACttatccccttcctcctcctcttcctccttctcttcttcagCCATGGTGGCGTCGGCTGGCCACCTCTTGGAGACCCACCTCCATATCAGCTCTCCTCGGGTTGAGAACCACACCCCACCCTTCTCTGACGCTCCTCACCTCCCTGTTCAGCCCCAGTTCCCCCACCCGAAACCCCAGTCTCAGCCTAAGCTACTGCACCCCCACCCGGAACCCCTGTCTCAACAACTACACCCCCACCCAGACCCCCGGTCTCAACTACTACACCCCCACATCCACCCCCACAACCACCCAGACCTCAAGACTCAGCTATTGCAGCCTCACCCCCACAACTACCCAGACCCCCAGTCTCAGCTACAGCAACCCCACAACCACCCAGACTCCCAGTCTCAGCTACAGCAACCCCACTCCCACCCCCACAACCACCCAGACCCCCAGTCTCAGCTACAGCAACCCCACCCCCACAACTACCCAGACCCCCAGTCTCAGCCTCAGTTACTGTATTCCCACTCTGACCCCCAGCCTCAGCCAAGGCCTTGGGCCAACCACCACCTCTATACCCACTCCCAGACCTCCAGGCGGCCCCAGCTCCAGCGCCAGCCACGTCTGCCTCCATGCCCAGTAGGGAGAATGGATCCTGCGTACGGACCGTAG

Function

NR:

description
PREDICTED: serine/threonine-protein kinase SIK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984399.1 True 3626 mRNA 0.57 12 7749406 7767337

Neighbor

gene id symbol gene type direction distance location
LOC110491195 NA coding upstream 983 7747187 ~ 7748423 (+)
LOC110491194 hsf2bp coding upstream 3430 7735574 ~ 7745976 (+)
LOC110491192 orc4 coding upstream 14835 7729466 ~ 7734571 (+)
LOC118965231 LOC106593490 coding upstream 72669 7673545 ~ 7676737 (+)
LOC110495388 mmadhc coding upstream 116531 7624474 ~ 7632875 (+)
LOC118965232 LOC106575843 coding downstream 55366 7822703 ~ 7827097 (+)
LOC110525651 LOC106575849 coding downstream 128250 7895587 ~ 7900191 (+)
LOC110495467 LOC100653484 coding downstream 133292 7900629 ~ 7934716 (+)
LOC110504762 LOC106573845 coding downstream 241595 8008932 ~ 8017366 (+)
LOC110497026 ptprn coding downstream 251096 8009587 ~ 8061480 (+)
G570696 NA non-coding upstream 37606 7710319 ~ 7711800 (+)
G570695 NA non-coding upstream 40085 7708192 ~ 7709321 (+)
G570683 LOC106574758 non-coding upstream 58405 7690214 ~ 7691001 (+)
G570679 NA non-coding upstream 82496 7666445 ~ 7666910 (+)
G570674 NA non-coding upstream 89083 7660122 ~ 7660323 (+)
G570731 NA non-coding downstream 18784 7786121 ~ 7787688 (+)
G570741 LOC106561090 non-coding downstream 30272 7797609 ~ 7798425 (+)
G570742 NA non-coding downstream 30798 7798135 ~ 7798834 (+)
G570743 NA non-coding downstream 35540 7802877 ~ 7804126 (+)
G570750 NA non-coding downstream 61510 7828847 ~ 7830431 (+)
G570616 NA other upstream 261808 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 308658 7438559 ~ 7440748 (+)
G570541 NA other upstream 442755 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 915112 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 983260 6761084 ~ 6767166 (+)
G570827 LOC107379067 other downstream 295770 8063107 ~ 8071558 (+)

Expression


Co-expression Network