LOC110497026 (ptprn)


Basic Information

Item Value
gene id LOC110497026
gene name ptprn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8009587 ~ 8061480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982368.1
TCTCGCAACACTTGCTGTCTCACTCACAGTTGGTGCGCTTCTGCTGCCGAAAATCCACGTCCTTCCTTTGGAGTCGGAGTGGATGTGCGACATTTAGAAAGTCCCTCCGATAGTTGACACGGATCATGAGGGTTTAAAACGCACCGCTGAACAGCTCTGTCTGTCTTGGGGAAAACCATGGGATCTCAGCGACTATGGAGCGTGTTATGTGTGATGGCGGTGTGCTATCAGACGGGGATGTCAAGCAGATACGGCTGTCTGTTTGAGAAGAAGCTCTGCCCCAGAGACCAGCCATGCTCAGATGATGGACTGTTTGGCCAATGTCTGCTGCCCCAGCAGGAGATGGTTCTGTATGAGGTGTCAGTGCCTGTGCTGCACAGACTACAGGAGGTGCTCAAGGAACTGATGATGCAAGGATTGTCCTGGCAGGATGACATCACCCAGTACGTCATTCGCAAGGAGCTGAGCCGTGTTTCACTGACCCGCCCCCTGTCTGGACGTCATGACAACCCCTCGTCTCAGTCCTCAGAACCTGTGCAGAATGCCCATCTTTCCAAGATGCAGTATCCTCCCAGCTCCAGGACCAAGGCTCAAGGGGACGATCCCAACCCAGACCTGATGCAGAGTTACCTGGACTACATGATCGTGGATCCCCCCAAGGCCTCCCAGTCCCTCCACATGCAAACTCTGGACCCTTACACCTACCGCCAGCAGTATGGTTACCAGGACGACGAGGAGCGCTCTCTTAACTCTCTGGAGGGTGGTGGTTTCCCCCGCCCTTCTTCTCACGCCGGGGGTAAAGGGTCCCGCCCCCAGGACCGAGACCGCCAGGTGCTCCAGGACCTGGTCTCCCTGTACCTCTCCTCCCCCGCCCAGCCGGCCTCCCGCCACCGTGGGGCAGCAACACCGATCTCTACCTCTCCCTTGTACCAGGACCTGGACTTCCCTCTGGACTACGCAGAGGACTACGTTTCCCAGCAGGACGTGGAGGTCcgcaagcagcagcagcagctggatCAGACGCAGAGCAACGCTCAGAAGGACTACGGATCGCTGGCTGGATTGGATGATGACTCCCTGCAGAAAGTGTCTCTGCTCCTGGACCACTATGGCATCGATATGAAGGACTTAACCCCTCCACAGCTGGCCAACCTGCCTGCAGCACTGAAACAGCTGCAGATGGAGAGTGCTACTGACTTGGGCACCGACACAGCAGACAAATACCGGAACAGTGCTGCCCCACGTAAGAAGATCACTGAAGGGGCCATGACACACAAGGTGGACAAATCTCCCGTGCTAGGTGCCCCCACCTCCCTTCCTGCCCCGCCCCCCACCATGGGGGCCCCTCCTGCCACAGAGGGAGCCAGTGTAAAGGAGCCAGGGGCCCCGGTGGAAACAGAGACGCAGGGGAAGAAAGAACCACCAGGAGGGACCACACATGTGAAGGAGGAATACGGCTACATCGTCACCAACCAAAGCCCCCTCAGTCTGTACGACGGGGTGCGTCTGCTGGGGCTCCTGGCTGAGAGGATCCCACTCTCCACTGGCTCTTTCATCAAcatcagtgtgGTGGGGCCTGCCCTGACATTCCGTGTCCGCCCCAACAGCCAGAACCTGAGTGCTGAAGACGTGGCAGAGAAAGCCGTTGCAGAGAAGAACTTTCTGGAGTCTGAAACTGCTCTGAAGATCCTGCAGACAGGTGTCGGTGAGAGAACTGATGGGCGGGGCTTACCTCAGGCCACCCGGGTCCGAGATGGCTCCCGTTGGGTGTTCGTGACCTTGGTGGGCGTGGCCTGTGTTGGCGGGATCCTGGTGGCGACAATGACCATCGTCTGCCTGCGTCGCCACACCAACCGCCTGGCGTCTGAGAAGCTAGGCCTGGGCCCAGAGGGAGGCAGCGTTACAcaccaggagtaccagGACCTGTGTCGTCAGCACATGGGATCCAGGGGACTCTTCGAGCGTCAGGAGGGGGCAGGAGCTGCggggggtggtgggggtgctagtggaggtggtggtggaggtggtggtggtggaggaggtggtggaggaggtacgGACACGTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGATGCGCCCCAGCCCAGCGACGCGCCCCAGCCCAGCCCGAGCTCCCACAGCAGCACCTCTTCCTGGTGCGAGGAACCAGCGCAGACCAACATGGACATCTCCACCGGTCATATGATCCTGGCTTACATGGAGGACCACCTAAAGAATAAGGACCGTCTGCtgaaggagtgggaggccctgtgTTCCTACCAGGCTGAACCCAGCACCATGTCTGTGGCGCAGAGTGACACCAACCTGAAGAAGAACCGCTGCCCTGACTCTGTGCCCTATGATCACTCCAGGGTGAAGATGAAAGCGGAGAACAACCCCTCCAGGACGGACTACATCAACGCCAGCACCATAATTGAGCATGACCCCCGGATGCCAACGTACATCGCCACCCAAGGACCCCTGTCTCACACCATCGCCGACTTCTGGCAGATGGTTTGGGAGAATGGCTGCACGGTGATAGTGATGATGACAGCCCTGGTTGAGGACGGAGAGAAACAGTGTGATCGCTACTGGCCTGACGAGGGATCCTCCCTCTACCACAtctatgagGTGAACCTGGTTTCGGAGCACATCTGGTGCAATGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTCCAGACCCAGGAGACTCGCACACTCACCCAGTTCCACTTCCTCAGCTGGCCTGCCCAGGGCATCCCCACCTCCACACGCACCCTACTGGACTTCCGCAGAAAGGTGAATAAGTGCTACAGAGGCAGATCTTGTCCGATCATTGTACACTGCAGTGATGGTACAGGCCGGACTGGCACCTACATCCTGATTGACATGGTTCTGAACCGCATGGCCAAGGGAGTGAAGGAGATTGACATTGCTGCTACCCTGGAACACGTCCGTGACCAGAGACCAGGGATGGTGCGCACCAAGGAGCAGTTTGAGTTTGCCCTGACCGCTGTGGCGGAGGAGGTGAATGCCATCCTTAAAGCCCTGCCCCAGTGAAACCAACTCGATCCAGACCTGCCTGTACCACAGACCCTCCCCCACTCAATGATCCTTCCCTTGCGCCATGGAATTATATCTGCAATCATCAACTGTGTCTTACCTCACCTTTTCTCTACAATATGGTGTAGAATGACCAAGCTGTCCTTTGTGCTTTCTCTCCTGTTTGAATGATGCCTTTGATTTCTTGCTATtctctgtggtggtggtgatgaggaaGAGGGTGCTTCTGTCATCTTCTATACATGTCCTCTGACAAAGTTCCCTTGTGAACAGTTTCCAGGTTATTGGGGTGAGCTGAGATGGCTTATTGTTCTCTCAAAGGTAGATAGAAATCATAATATTTTAACGTTTTACATCAAAGAACTATGTCCTTTTCAGAGTGTCATCACAAAGGTTTTGGCTGTGGTTGGTGAATGAGGATGGATGTGAGTCAAGAAGGCTTGCCAGCTGTCACTCTCCGATTCTCCCAGCTCCTCAGAGCGTATTTGTTTACAATTTACCCAAATCTCAAACCCTGCTCATTCACATTCCTTGTTCTCTGTGTTTTTACTAACCCTCTAGGTAAAATGACTAACCCatacttccctcctctcttcctgtgccatatagattgttGTAAATGATTTGTTCAATTATTGTTGTTTACCTCAAGCAAAccagaaaaaaaataaacaaaaaatgttaaaatatgAAAAATGCCTATTTTGTAACTTTGTGTGGTAACTAATAAACGTTGATGTGTGTGTTGCAAATGCTTAA
>XM_036982369.1
TCTCGCAACACTTGCTGTCTCACTCACAGTTGGTGCGCTTCTGCTGCCGAAAATCCACGTCCTTCCTTTGGAGTCGGAGTGGATGTGCGACATTTAGAAAGTCCCTCCGATAGTTGACACGGATCATGAGGGTTTAAAACGCACCGCTGAACAGCTCTGTCTGTCTTGGGGAAAACCATGGGATCTCAGCGACTATGGAGCGTGTTATGTGTGATGGCGGTGTGCTATCAGACGGGGATGTCAAGCAGATACGGCTGTCTGTTTGAGAAGAAGCTCTGCCCCAGAGACCAGCCATGCTCAGATGATGGACTGTTTGGCCAATGTCTGCTGCCCCAGCAGGAGATGGTTCTGTATGAGGTGTCAGTGCCTGTGCTGCACAGACTACAGGAGGTGCTCAAGGAACTGATGATGCAAGGATTGTCCTGGCAGGATGACATCACCCAGTACGTCATTCGCAAGGAGCTGAGCCGTGTTTCACTGACCCGCCCCCTGTCTGGACGTCATGACAACCCCTCGTCTCAGTCCTCAGAACCTGTGCAGAATGCCCATCTTTCCAAGATGCAGTATCCTCCCAGCTCCAGGACCAAGGCTCAAGGGGACGATCCCAACCCAGACCTGATGCAGAGTTACCTGGACTACATGATCGTGGATCCCCCCAAGGCCTCCCAGTCCCTCCACATGCAAACTCTGGACCCTTACACCTACCGCCAGCAGTATGGTTACCAGGACGACGAGGAGCGCTCTCTTAACTCTCTGGAGGGTGGTGGTTTCCCCCGCCCTTCTTCTCACGCCGGGGGTAAAGGGTCCCGCCCCCAGGACCGAGACCGCCAGGTGCTCCAGGACCTGGTCTCCCTGTACCTCTCCTCCCCCGCCCAGCCGGCCTCCCGCCACCGTGGGGCAGCAACACCGATCTCTACCTCTCCCTTGTACCAGGACCTGGACTTCCCTCTGGACTACGCAGAGGACTACGTTTCCCAGCAGGACGTGGAGGTCcgcaagcagcagcagcagctggatCAGACGCAGAGCAACGCTCAGAAGGACTACGGATCGCTGGCTGGATTGGATGATGACTCCCTGCAGAAAGTGTCTCTGCTCCTGGACCACTATGGCATCGATATGAAGGACTTAACCCCTCCACAGCTGGCCAACCTGCCTGCAGCACTGAAACAGCTGCAGATGGAGAGTGCTACTGACTTGGGCACCGACACAGCAGACAAATACCGGAACAGTGCTGCCCCACGTAAGAAGATCACTGAAGGGGCCATGACACACAAGGTGGACAAATCTCCCGTGCTAGGTGCCCCCACCTCCCTTCCTGCCCCGCCCCCCACCATGGGGGCCCCTCCTGCCACAGAGGGAGCCAGTGTAAAGGAGCCAGGGGCCCCGGTGGAAACAGAGACGCAGGGGAAGAAAGAACCACCAGGAGGGACCACACATGTGAAGGAGGAATACGGCTACATCGTCACCAACCAAAGtgtgGTGGGGCCTGCCCTGACATTCCGTGTCCGCCCCAACAGCCAGAACCTGAGTGCTGAAGACGTGGCAGAGAAAGCCGTTGCAGAGAAGAACTTTCTGGAGTCTGAAACTGCTCTGAAGATCCTGCAGACAGGTGTCGGTGAGAGAACTGATGGGCGGGGCTTACCTCAGGCCACCCGGGTCCGAGATGGCTCCCGTTGGGTGTTCGTGACCTTGGTGGGCGTGGCCTGTGTTGGCGGGATCCTGGTGGCGACAATGACCATCGTCTGCCTGCGTCGCCACACCAACCGCCTGGCGTCTGAGAAGCTAGGCCTGGGCCCAGAGGGAGGCAGCGTTACAcaccaggagtaccagGACCTGTGTCGTCAGCACATGGGATCCAGGGGACTCTTCGAGCGTCAGGAGGGGGCAGGAGCTGCggggggtggtgggggtgctagtggaggtggtggtggaggtggtggtggtggaggaggtggtggaggaggtacgGACACGTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGATGCGCCCCAGCCCAGCGACGCGCCCCAGCCCAGCCCGAGCTCCCACAGCAGCACCTCTTCCTGGTGCGAGGAACCAGCGCAGACCAACATGGACATCTCCACCGGTCATATGATCCTGGCTTACATGGAGGACCACCTAAAGAATAAGGACCGTCTGCtgaaggagtgggaggccctgtgTTCCTACCAGGCTGAACCCAGCACCATGTCTGTGGCGCAGAGTGACACCAACCTGAAGAAGAACCGCTGCCCTGACTCTGTGCCCTATGATCACTCCAGGGTGAAGATGAAAGCGGAGAACAACCCCTCCAGGACGGACTACATCAACGCCAGCACCATAATTGAGCATGACCCCCGGATGCCAACGTACATCGCCACCCAAGGACCCCTGTCTCACACCATCGCCGACTTCTGGCAGATGGTTTGGGAGAATGGCTGCACGGTGATAGTGATGATGACAGCCCTGGTTGAGGACGGAGAGAAACAGTGTGATCGCTACTGGCCTGACGAGGGATCCTCCCTCTACCACAtctatgagGTGAACCTGGTTTCGGAGCACATCTGGTGCAATGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTCCAGACCCAGGAGACTCGCACACTCACCCAGTTCCACTTCCTCAGCTGGCCTGCCCAGGGCATCCCCACCTCCACACGCACCCTACTGGACTTCCGCAGAAAGGTGAATAAGTGCTACAGAGGCAGATCTTGTCCGATCATTGTACACTGCAGTGATGGTACAGGCCGGACTGGCACCTACATCCTGATTGACATGGTTCTGAACCGCATGGCCAAGGGAGTGAAGGAGATTGACATTGCTGCTACCCTGGAACACGTCCGTGACCAGAGACCAGGGATGGTGCGCACCAAGGAGCAGTTTGAGTTTGCCCTGACCGCTGTGGCGGAGGAGGTGAATGCCATCCTTAAAGCCCTGCCCCAGTGAAACCAACTCGATCCAGACCTGCCTGTACCACAGACCCTCCCCCACTCAATGATCCTTCCCTTGCGCCATGGAATTATATCTGCAATCATCAACTGTGTCTTACCTCACCTTTTCTCTACAATATGGTGTAGAATGACCAAGCTGTCCTTTGTGCTTTCTCTCCTGTTTGAATGATGCCTTTGATTTCTTGCTATtctctgtggtggtggtgatgaggaaGAGGGTGCTTCTGTCATCTTCTATACATGTCCTCTGACAAAGTTCCCTTGTGAACAGTTTCCAGGTTATTGGGGTGAGCTGAGATGGCTTATTGTTCTCTCAAAGGTAGATAGAAATCATAATATTTTAACGTTTTACATCAAAGAACTATGTCCTTTTCAGAGTGTCATCACAAAGGTTTTGGCTGTGGTTGGTGAATGAGGATGGATGTGAGTCAAGAAGGCTTGCCAGCTGTCACTCTCCGATTCTCCCAGCTCCTCAGAGCGTATTTGTTTACAATTTACCCAAATCTCAAACCCTGCTCATTCACATTCCTTGTTCTCTGTGTTTTTACTAACCCTCTAGGTAAAATGACTAACCCatacttccctcctctcttcctgtgccatatagattgttGTAAATGATTTGTTCAATTATTGTTGTTTACCTCAAGCAAAccagaaaaaaaataaacaaaaaatgttaaaatatgAAAAATGCCTATTTTGTAACTTTGTGTGGTAACTAATAAACGTTGATGTGTGTGTTGCAAATGCTTAA
>TU650650
ATAATATTTTAACTATGTCCTTTTCAGAGTGTCATCACAAAGGTTTTGGCTGTGGTTGGTGAATGAGGATGGATGTGAGTCAAGAAGGCTTGCCAGCTGTCACTCTCCGATTCTCCCAGCTCCTCAGAGCGTATTTGTTTACAATTTACCCAAATCTCAAACCCTGCTCATTCACATTCCTTGTTCTCTGTGTTTTTACTAACCCTCTAGGTAAAATGACTAACCCatacttccctcctctcttcctgtgccatatagattgttGTAAATGATTTGTTCAATTATTGTTGTTTACCTCAAGCAAAccagaaaaaaaataaacaaaaaatgttaaaatatgAAAAATGCCTATTTTGTAACTTTGTGTGGTAACTAATAAACGTTGATGTGTGTGTTGCAAATGCTTAATAGACTGAGTGCTGTTTTCTCAGATGTTTTTTTACAATGTTTATTTATTGTGCAggtttatatttttttcaaatcCTACCAATCACAATCGTTCAAGGGGTCAAATTAGTTTTCAAACATGCACGTGTCGTATTTGCCACGCAAACAGACTGACGTCTCCTACTGCCAACGAGAGCTAGTGTGAGGTAAGGTTTCATCCCAATATGCTGACAAAATCATCCAATCCAAGTGTTATGAACATTCAACGTTACAGTAATATAAATGTACTTTCAACCACGAAGTCCTTTTGATTCAATTTAAAATAAAGTTTTTGGCCAGCCGTGAAGGCATTTCGCGCGCCAGAGAGGCCAGCCAATGCTGTTAGCTAGAAGAGCTAGCTAACTTCAGGCATAGCATCCCCTTCATACAGAAATAATTAGCGAAAATGTGTACTTTTTTTACTCActattttattggccagtctagtTAACGTTCGACTATAATCTGATAGCAAGAGGTGGGGAAACTAGCTCCGGCTCGGAAAACGGTTTTGATCGGTCATCCAACTCGTAATTCCAAATCGGGCATCTTTCAAGAACTCCgtcctgaagatcactgacgtcatgatatGAACTCGGTTTTTGTCCCGAGTTCCCAATGCCACGT
>TU650647
ACGCCGGGGGTAAAGGGTCCCGCCCCCAGGACCGAGACCGCCAGGTGCTCCAGGACCTGGTCTCCCTGTACCTCTCCTCCCCCGCCCAGCCGGCCTCCCGCCACCGTGGGGCAGCAACACCGATCTCTACCTCTCCCTTGTACCAGGACCTGGACTTCCCTCTGGACTACGCAGAGGACTACGTTTCCCAGCAGGACGTGGAGGTCcgcaagcagcagcagcagctggatCAGACGCAGAGCAACGCTCAGAAGGACTACGGATCGCTGGCTGGATTGGATGATGACTCCCTGCAGAAAGTGTCTCTGCTCCTGGACCACTATGGCATCGATATGAAGGACTTAACCCCTCCACAGCTGGCCAACCTGCCTGCAGCACTGAAACAGCTGCAGATGGAGAGTGCTACTGACTTGGGCACCGACACAGCAGACAAATACCGGAACAGTGCTGCCCCACGTAAGAAGATCACTGAAGGGGCCATGACACACAAGGTGGACAAATCTCCCGTGCTAGGTGCCCCCACCTCCCTTCCTGCCCCGCCCCCCACCATGGGGGCCCCTCCTGCCACAGAGGGAGCCAGTGTAAAGGAGCCAGGGGCCCCGGTGGAAACAGAGACGCAGGGGAAGAAAGAACCACCAGGAGGGACCACACATGTGAAGGAGGAATACGGCTACATCGTCACCAACCAAAGCCCCCTCAGTCTGTACGACGGGGTGCGTCTGCTGGGGCTCCTGGCTGAGAGGATCCCACTCTCCACTGGCTCTTTCATCAAcatcagtgtgGTGGGGCCTGCCCTGACATTCCGTGTCCGCCCCAACAGCCAGAACCTGAGTGCTGAAGACGTGGCAGAGAAAGCCGTTGCAGAGAAGAACTTTCTGGAGTCTGAAACTGCTCTGAAGATCCTGCAGACAGGTGTCGGTGAGAGAACTGATGGGCGGGGCTTACCTCAGGCCACCCGGGTCCGAGATGGCTCCCGTTGGGTGTTCGTGACCTTGGTGGGCGTGGCCTGTGTTGGCGGGATCCTGGTGGCGACAATGACCATCGTCTGCCTGCGTCGCCACACCAACCGCCTGGCGTCTGAGAAGCTAGGCCTGGGCCCAGAGGGAGGCAGCGTTACAcaccaggagtaccagGACCTGTGTCGTCAGCACATGGGATCCAGGGGACTCTTCGAGCGTCAGGAGGGGGCAGGAGCTGCggg

Function

symbol description
ptprn Enables spectrin binding activity and ubiquitin-like protein ligase binding activity. Involved in several processes, including dense core granule maturation; insulin secretion; and positive regulation of type B pancreatic cell proliferation. Located in nucleus. Implicated in type 1 diabetes mellitus.

NR:

description
receptor-type tyrosine-protein phosphatase-like N isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982368.1 False 3831 mRNA 0.55 23 8018433 8060835
XM_036982369.1 False 3744 mRNA 0.55 22 8018433 8060835
TU650650 False 1053 lncRNA 0.39 2 8009587 8061480
TU650647 True 1201 TUCP 0.61 9 8035672 8053731

Neighbor

gene id symbol gene type direction distance location
LOC110504762 LOC106573845 coding upstream 1067 8008932 ~ 8017366 (+)
LOC110495467 LOC100653484 coding upstream 83717 7900629 ~ 7934716 (+)
LOC110525651 LOC106575849 coding upstream 118242 7895587 ~ 7900191 (+)
LOC118965232 LOC106575843 coding upstream 191336 7822703 ~ 7827097 (+)
LOC110491196 LOC106575747 coding upstream 251096 7749406 ~ 7767337 (+)
LOC110528741 LOC106573853 coding downstream 192891 8253726 ~ 8301029 (+)
LOC110527258 cacnb4 coding downstream 417911 8478746 ~ 8503131 (+)
LOC110495575 LOC106598167 coding downstream 515904 8576739 ~ 8578039 (+)
LOC110496917 LOC106595105 coding downstream 524198 8585033 ~ 8586714 (+)
LOC118965341 LOC106575870 coding downstream 529546 8590381 ~ 8592862 (+)
G570840 NA non-coding upstream 11214 7998427 ~ 8007219 (+)
G570844 NA non-coding upstream 15429 8002510 ~ 8003004 (+)
G570836 LOC106575840 non-coding upstream 26730 7985881 ~ 7991703 (+)
G570821 NA non-coding upstream 30959 7976933 ~ 7987474 (+)
G570827 LOC107379067 non-coding downstream 2272 8063107 ~ 8071558 (+)
G570869 NA non-coding downstream 18948 8079783 ~ 8080225 (+)
G570870 NA non-coding downstream 19535 8080370 ~ 8080853 (+)
G570871 NA non-coding downstream 20083 8080918 ~ 8081428 (+)
G570872 NA non-coding downstream 20674 8081509 ~ 8081812 (+)
G570616 NA other upstream 530835 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 577685 7438559 ~ 7440748 (+)
G570868 NA other downstream 16910 8077745 ~ 8079340 (+)
G570875 NA other downstream 23436 8084271 ~ 8085753 (+)
G570834 NA other downstream 79447 8140282 ~ 8140762 (+)
G572315 NA other downstream 589145 8649980 ~ 8650898 (+)
LOC110491195 NA coding upstream 261164 7747187 ~ 7748423 (+)
G570824 LOC106575840 non-coding upstream 23243 7980758 ~ 7986344 (+)
G570541 NA other upstream 702936 7304962 ~ 7306651 (+)
G570854 NA non-coding upstream 11800 8023627 ~ 8023872 (+)

Expression


Co-expression Network