LOC118965341 (LOC106575870)


Basic Information

Item Value
gene id LOC118965341
gene name LOC106575870
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8590381 ~ 8592862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984403.1
ATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAGACAGGAACACTTATGGGGGATTCTGGAGCGGCCCCTGAAACAGTGTTTTCTGTCAAACTAAATATCACAACTTTCAAAGCATACTTTCTCTTTCTCCAGATCATCTTCTACGAGGACAGGAACTTCCAGGGCTGCTCCTATGAGTGCAGCAGCGACTGCTCCGAGCTCTCCTCCCACCTGAACAGGTGCAACTCCTGCAGGGTGGAGAGTGGCATGTTCATGGTGTACGACCGGCCCAACTAcatgggccaccagtacttcctgAGGAGGGGAGAGTACCCTGAGTACCAGCACATGTTAGGCTTCAACGACTGCATCAGGTCTTGTCGTATGATCCCCCAGCACATGGGCCAGTTCAGGATGAGGATCTACGAGAAGGAGAACTTCGGAGGCCAGATGCACGAGGTGATGGACGACTGTGACTCCATCCAGGAGCGTTACCATATGCCCGAGATGCAGTCCTGCAACGTGATGGACGGCCACTGGGTCATGTACGAGCAGCCCCAATTCAGAGGCATGCAGACCTACCTGAGGCCTGGAGAGTACAGGAACACGAGAGAGATGGGAATGGGAAATGATGAAATGAGGTTCCAGTCCATGAGGCGCATCAGCAACGATGCTGCCTTTTAAATGTGCTGTCTTTAAAGAGTGCAACGACTTtttaataaacattttaaaccttcA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984403.1 True 945 mRNA 0.54 3 8590381 8592862

Neighbor

gene id symbol gene type direction distance location
LOC110496917 LOC106595105 coding upstream 3667 8585033 ~ 8586714 (+)
LOC110495575 LOC106598167 coding upstream 12342 8576739 ~ 8578039 (+)
LOC110527258 cacnb4 coding upstream 87250 8478746 ~ 8503131 (+)
LOC110528741 LOC106573853 coding upstream 289352 8253726 ~ 8301029 (+)
LOC110497026 ptprn coding upstream 529546 8009587 ~ 8061480 (+)
LOC110527267 LOC106575871 coding downstream 4500 8597362 ~ 8598340 (+)
LOC110527268 LOC106575873 coding downstream 15822 8608684 ~ 8609863 (+)
LOC110527270 LOC106574807 coding downstream 27801 8620663 ~ 8626882 (+)
LOC118965237 LOC106574888 coding downstream 295150 8888012 ~ 8890717 (+)
LOC110512356 LOC106575836 coding downstream 317829 8910691 ~ 8912800 (+)
G572177 NA non-coding upstream 49239 8540943 ~ 8541142 (+)
G572173 NA non-coding upstream 51607 8538551 ~ 8538774 (+)
G572154 NA non-coding upstream 82469 8506186 ~ 8507912 (+)
G572134 NA non-coding upstream 117874 8471423 ~ 8472507 (+)
G572126 NA non-coding upstream 133481 8456601 ~ 8456900 (+)
G572249 NA non-coding downstream 4017 8596879 ~ 8597150 (+)
G572253 NA non-coding downstream 11993 8604855 ~ 8605723 (+)
G572255 NA non-coding downstream 17449 8610311 ~ 8610698 (+)
G572256 NA non-coding downstream 18400 8611262 ~ 8611479 (+)
G572260 NA non-coding downstream 21325 8614187 ~ 8614424 (+)
G570834 NA other upstream 449619 8140282 ~ 8140762 (+)
G570875 NA other upstream 504628 8084271 ~ 8085753 (+)
G570868 NA other upstream 511041 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 518823 8063107 ~ 8071558 (+)
G572315 NA other downstream 57118 8649980 ~ 8650898 (+)
G572476 NA other downstream 329473 8922335 ~ 8922794 (+)
G572449 NA other downstream 337247 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1373805 9879599 ~ 9980430 (+)
G573366 NA other downstream 1535259 10128121 ~ 10132016 (+)

Expression


Co-expression Network