LOC110527267 (LOC106575871)


Basic Information

Item Value
gene id LOC110527267
gene name LOC106575871
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8597362 ~ 8598340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608436.2
TGGAGCTGGGGGTTCTTTTGACGTTAAGCCAGGTATAAAAGTACCCAAGGACGGAGAATAAGCTATACATGTTCAGGCCAAGTATCACCATAGATCTGTTACCCAAGCAAGAGTCACCATGACCATGGGAAAGATCATCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCTCAGACTGCCCTGAGTTGACCTCCTACCTGAGCAGGTGCAACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTGTATGACCGCTCCAACTTCCAGGGAAACCAGTACTTtgcgaggagaggagagtatgGTGACCACCAGCGTATGGGCATGTCTGACTGCATTAGGTCCTGCCGTAACATCCCCATGCACAGTGGCCAGTTCAGGATGAGGATCTACGAGAGGGAAAACTTTGGAGGCCAGATGCACGAGATGATGGACGACTGTGAGAACATGATGGACCGTTACCGTATGTCCGACTGCCAGTCCTGCAATGTGATGGACGGCCACTGGCTCATGTACGAGCAGCCCAACTACAGAGGCAGGCAGATGTACCTGAGGCCTGGAGAGTACAGGAACTTCAGCAACATGGGGGGAAGCATGGGCAACATGAGATGGCAGTCTATGAGGCGTATCATGGATTCTTGTTAACTCACTGTTTGATGTGAATATTAGGTTGACAATAAAGGCTTGTATAAAAGCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608436.2 True 707 mRNA 0.51 3 8597362 8598340

Neighbor

gene id symbol gene type direction distance location
LOC118965341 LOC106575870 coding upstream 4500 8590381 ~ 8592862 (+)
LOC110496917 LOC106595105 coding upstream 10648 8585033 ~ 8586714 (+)
LOC110495575 LOC106598167 coding upstream 19323 8576739 ~ 8578039 (+)
LOC110527258 cacnb4 coding upstream 94231 8478746 ~ 8503131 (+)
LOC110528741 LOC106573853 coding upstream 296333 8253726 ~ 8301029 (+)
LOC110527268 LOC106575873 coding downstream 10344 8608684 ~ 8609863 (+)
LOC110527270 LOC106574807 coding downstream 22323 8620663 ~ 8626882 (+)
LOC118965237 LOC106574888 coding downstream 289672 8888012 ~ 8890717 (+)
LOC110512356 LOC106575836 coding downstream 312351 8910691 ~ 8912800 (+)
LOC110527273 LOC106574813 coding downstream 555597 9153937 ~ 9159959 (+)
G572249 NA non-coding upstream 212 8596879 ~ 8597150 (+)
G572177 NA non-coding upstream 56220 8540943 ~ 8541142 (+)
G572173 NA non-coding upstream 58588 8538551 ~ 8538774 (+)
G572154 NA non-coding upstream 89450 8506186 ~ 8507912 (+)
G572134 NA non-coding upstream 124855 8471423 ~ 8472507 (+)
G572253 NA non-coding downstream 6515 8604855 ~ 8605723 (+)
G572255 NA non-coding downstream 11971 8610311 ~ 8610698 (+)
G572256 NA non-coding downstream 12922 8611262 ~ 8611479 (+)
G572260 NA non-coding downstream 15847 8614187 ~ 8614424 (+)
G572262 NA non-coding downstream 17184 8615524 ~ 8615754 (+)
G570834 NA other upstream 456600 8140282 ~ 8140762 (+)
G570875 NA other upstream 511609 8084271 ~ 8085753 (+)
G570868 NA other upstream 518022 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 525804 8063107 ~ 8071558 (+)
LOC110497026 ptprn other upstream 543631 8009587 ~ 8061480 (+)
G572315 NA other downstream 51640 8649980 ~ 8650898 (+)
G572476 NA other downstream 323995 8922335 ~ 8922794 (+)
G572449 NA other downstream 331769 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1368327 9879599 ~ 9980430 (+)
G573366 NA other downstream 1529781 10128121 ~ 10132016 (+)

Expression


Co-expression Network