LOC110527268 (LOC106575873)


Basic Information

Item Value
gene id LOC110527268
gene name LOC106575873
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8608684 ~ 8609863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608437.2
GCACCTCCCAGCCCTTGCTGAGTGCCAGTGAGACCAAAGTTAACCTTCGCAATGGGAAAGATCATTTTCTACGAAGACAGAAACTTCCAGGGTCACTCTTATGAGTGTGGTGGAGAATGCTCTGACCTACATGCCCACTTCAGCCGCTGCAACTCCATCAAGGTGGAGAGCGGCAACTGGATGGTGTACGAGAGGCCCAGCTACATGGGCTATCAGTACTTCCTGAAGGAAGGCGAGTTCTCCGACTACCAGCGTTGGATGGGCTTCAATGACTGCGTCAGGTCCTGCCGCATGATCCCCCAGCATCAGGGATCTCACCGTATGAGAATCTTCGAGCGCTCCGAGTTTGGAGGACAGATGACGGAGTTGACGGACGACTGCCCCAACCTCTACGAGCGCTTCCATTACAATGACATCTACTCTTGCAATGTGATGGAGGGCTCCTGGCTTTTGTATGAGCACCCCAACTACAGGGGGCGCCAGTACCTGCTGACCCCGGGAGAGTACAGGAGATACAACGAGTGGGGAAGCATGAGCGCCAGAGTGGGTTCCATCAGACGTATTGATATGTAAGAAGCTGAATGTATGACTCTTGAATCAATGACCAATGGGAAATCATGTTGAAATAAATCCATCCACACATTAGA

Function

NR:

description
beta-crystallin S-1-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608437.2 True 647 mRNA 0.52 3 8608684 8609863

Neighbor

gene id symbol gene type direction distance location
LOC110527267 LOC106575871 coding upstream 10344 8597362 ~ 8598340 (+)
LOC118965341 LOC106575870 coding upstream 15822 8590381 ~ 8592862 (+)
LOC110496917 LOC106595105 coding upstream 21970 8585033 ~ 8586714 (+)
LOC110495575 LOC106598167 coding upstream 30645 8576739 ~ 8578039 (+)
LOC110527258 cacnb4 coding upstream 105553 8478746 ~ 8503131 (+)
LOC110527270 LOC106574807 coding downstream 10800 8620663 ~ 8626882 (+)
LOC118965237 LOC106574888 coding downstream 278149 8888012 ~ 8890717 (+)
LOC110512356 LOC106575836 coding downstream 300828 8910691 ~ 8912800 (+)
LOC110527273 LOC106574813 coding downstream 544074 9153937 ~ 9159959 (+)
LOC110515808 LOC106575810 coding downstream 575412 9185275 ~ 9664625 (+)
G572253 NA non-coding upstream 2961 8604855 ~ 8605723 (+)
G572249 NA non-coding upstream 11534 8596879 ~ 8597150 (+)
G572177 NA non-coding upstream 67542 8540943 ~ 8541142 (+)
G572173 NA non-coding upstream 69910 8538551 ~ 8538774 (+)
G572154 NA non-coding upstream 100772 8506186 ~ 8507912 (+)
G572255 NA non-coding downstream 448 8610311 ~ 8610698 (+)
G572256 NA non-coding downstream 1399 8611262 ~ 8611479 (+)
G572260 NA non-coding downstream 4324 8614187 ~ 8614424 (+)
G572262 NA non-coding downstream 5661 8615524 ~ 8615754 (+)
G572303 NA non-coding downstream 29525 8639388 ~ 8639656 (+)
G570834 NA other upstream 467922 8140282 ~ 8140762 (+)
G570875 NA other upstream 522931 8084271 ~ 8085753 (+)
G570868 NA other upstream 529344 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 537126 8063107 ~ 8071558 (+)
LOC110497026 ptprn other upstream 554953 8009587 ~ 8061480 (+)
G572315 NA other downstream 40117 8649980 ~ 8650898 (+)
G572476 NA other downstream 312472 8922335 ~ 8922794 (+)
G572449 NA other downstream 320246 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1356804 9879599 ~ 9980430 (+)
G573366 NA other downstream 1518258 10128121 ~ 10132016 (+)

Expression


Co-expression Network