XLOC_002484 (NHLRC3)


Basic Information

Item Value
gene id XLOC_002484
gene name NHLRC3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 304596 ~ 309894 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004654
ATGAGGAGGCGCAGTTTCTGCTGTATCTTTGCTGGGATCATGctgtttgagtgtgtgagtgtgtgctgttCTCAGGTCAGTGTGGCGTGGAGATCTCAGACTGAGTTCAGTGTTTCTGGACGAGCGCTCTACAAACTGGACCTGTCCTGGCCCAAGTACCCAGAGTTCTTCACTGGACAGGTGTTTGCGGTGGCCGTCAATCATCTGGCGGGGCTGGTGTACGTGGCGCAGagaGGTGAGAATGTCCCTAAAGTGTTAGTGTTCAGCACAGACGGAGAGTTTCTTCAGGCCTGGAACTCCAGCACTCTGGAAATGCCTCATGGAATCTTCCTGGCCGATGCGTCCACCGAGCCCACACTCTGGGTCACCGATGTGGGGAacgggcCGTTCGGGCACACTGTAAAGCAGTACTCTCCATCTGGGAAGCTGCTGCAGGTTTTGGGAACTCCAGGTACAGCAGGATCGTCTCTCAGTCCGCTTCAGTTCGATCAGCCGGCAGAGATATTCGTCCACAGCTCTGGAGAAATCTACATCGTGGACGGAGACGGAGGAATGAATAACCGCCTCATCAAACTCTCCAAAGatcTGCAGGTGCTGTGGATGCATGGAGAGAAGGGTCAGGGTCTGGCTCAGTTCTACATCCCTCACAGTGTGGCGGTGGACAGCTCtcagagggtgtgtgtgtgtgtgtgtgtCTGCTTTAAAGAGGACGCGCCGTACTCCGTCAGACTCACTCCTGATCAGAAGTACCTGGTCGTGGCTCAGCTGAACACTAATCAGGTGACGCTGCTGGAGGCTCCACCAGTGGGCATCATCGGTCAGTGTCAGGTGATCAGCTCCATCCACCTGCCCGAGGACGTCAAACCACACCTGGTGGAGCTGGACCTGAAGAGCGCAGCGCTGTACGTGGCAGAGATCGGGGCCAATCAGGCGCAGAGGTTCATCCCGCTGACAACCAGCAGCGTGTAG
>TCONS_00005738
GGTTCtgctcttcatcatcttcatctgcaCATTCAGCTCTCACGTCAGTGTGGCGTGGAGATCTCAGACTGAGTTCAGTGTTTCTGGACGAGCGCTCTACAAACTGGACCTGTCCTGGCCCAAGTACCCAGAGTTCTTCACTGGACAGGTGTTTGCGGTGGCCGTCAATCATCTGGCGGGGCTGGTGTACGTGGCGCAGagaGGTGAGAATGTCCCTAAAGTGTTAGTGTTCAGCACAGACGGAGAGTTTCTTCAGGCCTGGAACTCCAGCACTCTGGAAATGCCTCATGGAATCTTCCTGGCCGATGCGTCCACCGAGCCCACACTCTGGGTCACCGATGTGGGGAacgggcCGTTCGGGCACACTGTAAAGCAGTACTCTCCATCTGGGAAGCTGCTGCAGGTTTTGGGAACTCCAGGTACAGCAGGATCGTCTCTCAGTCCGCTTCAGTTCGATCAGCCGGCAGAGATATTCGTCCACAGCTCTGGAGAAATCTACATCGTGGACGGAGACGGAGGAATGAATAACCGCCTCATCAAACTCTCCAAAGGTGACACTAACTAaaatatgaatcatttattaaaacatgCCGGTTTACCTT

Function

symbol description
nhlrc3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be located in azurophil granule lumen and extracellular region.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004654 False 969 mRNA 0.56 7 304596 309894
TCONS_00005738 True 602 lncRNA 0.52 4 307849 309853

Neighbor

gene id symbol gene type direction distance location
XLOC_002483 emsy coding downstream 1769 284303 ~ 302827 (-)
XLOC_002482 klhl35 coding downstream 59851 236457 ~ 244745 (-)
XLOC_002481 psmg1 coding downstream 93893 206996 ~ 210703 (-)
XLOC_002480 NA coding downstream 123892 179863 ~ 180704 (-)
XLOC_002479 erg coding downstream 129034 161660 ~ 175562 (-)
XLOC_002485 akt2l coding upstream 1828 311722 ~ 322769 (-)
XLOC_002486 vaspa coding upstream 13507 323401 ~ 342564 (-)
XLOC_002487 CABZ01049604.1 coding upstream 30018 339912 ~ 340027 (-)
XLOC_002488 NA coding upstream 44199 354093 ~ 354657 (-)
XLOC_002489 NA coding upstream 46661 356555 ~ 358707 (-)
XLOC_002473 NA non-coding downstream 252622 48851 ~ 51974 (-)
XLOC_002472 CABZ01064670.1 non-coding downstream 259110 32901 ~ 45486 (-)
XLOC_002471 NA non-coding downstream 273766 30306 ~ 30830 (-)
XLOC_002491 NA non-coding upstream 106103 415997 ~ 421653 (-)
XLOC_002492 NA non-coding upstream 236308 546202 ~ 548201 (-)

Expression


Co-expression Network