LOC118965237 (LOC106574888)


Basic Information

Item Value
gene id LOC118965237
gene name LOC106574888
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8888012 ~ 8890717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982442.1
TAAAAGGAATGAATGAATTGAGTTGGTCACAACACTACTTTAAACATTGTCTAACTTTACTGGTGATGTTACATAGATTGTAGGCCTATAAAAATAAGGAATGATATTACCTTATGTGATAAGTAGGTTATGGGTAAAGAATGTACTGATTGAGTCGTTCAGGGTGTAAGCAGATTCCTATTGGAGAGGACGCAGCCCTGTGGGCGTGGCTGTCCAGAGTAAGCGGCCACGGTGTTGTTAGTCGGTATGGTTAGGAGCCGGAGCAAGAAGACGCACGAGGGAAGACAGTCGTGGAGTGTAGGTTTTTTTCTGAGAATAGGAGGCTGTTTCGCTAAATATTGTTGAAAGAAAAAGTGTGGCGCAAGGATTAGGCGTTGCTGCCTGAAAATTCCGTCTGCATTATCGAGTCGAAATGGACTTTATTTGATTGCACCGGAGGCGCGTTTTCTAAAGCGTTGGAGGAGCTTCCATGGCGACCATGACGCACATCTGCCCTCTTTACATCAGCGTTCCGTGCCTACTCCTGCTGATGCGCGCACTACTGGTGCGCGCTGCCTCCAAGGCCATCGTGTGTGAACCCATCACGGTCCCCATGTGCAAGGGCATCGGCTACAACCTGACCTACACGCCCAACCAGTTTAACCACGACACTCAGGACGAGGTGGGGCTGGAGGTGCACCAGTTCTGGCCGCTGGTGCGcatccactgttcccctgacctGCTCTTCTTCCTCTGCAGCATGTACACCCCAATCTGCATCCCGGACTATCGCAAGCCTCTGCCCCCGTGCCGCTCCGTGTGCGAGCGGGCCAAGCGTGGCTGCTCCCCCCTGATGAGCCAGTATGGGTTTGAATGGCCCGAGAGGATGAGCTGCGAGGGGCTACCAGAGCTGGGTGATGCTGACCTCCTCTGTATGGACCGGAACAGCAGTGACGCCACTACTCTGTCCCCAGGCCCGGCCTTCCCCCCGAAGCCTACCCCCAAAGCCCCCTACCGCAACCCAGCCCGCCGCAGGCCGCATCTCCTGCCCAAACCCcaccacagtcaccaccaccaGGACTGTGAACAACGCGGCTGCCGCTGTCGCCACCCCCTGGTGTCCGTCAAGCATGAGGCCCGCTCACTGTACGGCCGCGGCGTCCACACAGGCCCCGTGGAGAACTGCGCCCAGCCCTGCCGTCAGCCCTACTTCACCCCAGACGAACACGCCTTCACCTCCCTCTGGATCGGCCTGTGGTCGGTCCTCTGCTTCGTCTCGACCCTAACTACGGTGGTCACGTTCCTGATTGACCGCGACCGCTTCTCCTACCCCGAGCTGCCTATCGTCTACCTGGCTGCCTgctacctcttcatctccctggGATACATGGTGCGGCTGGCGGCGGGCCACGAGCGTGTGGCGTGCTCCGAGGACGGCGGGCATGTGCTGTACGACGCTTCGGGCCCTGCCGGCCTGTGCACCTTGGTGTTCCTGCTGGTCTACTTCTTTGGCATGGCCGGCGCAATCTGGTGGGTGGTGCTCTCGCTCACCTGGTTCCTGGCGGCGGGTATGAAGTGGGGCAACGAGGCCATCGCCGGGTACTCGCAGTACTTCCACCTGGCCGCCTGGCTGGTGCCCAGCGTCAAGACCATCGCCGTGCTGGCCCTGAGCGCTGCTGACGGAGACCCTGTGGCAGGGATATGCTACGTGGGCAACCAGAGTGTGGAGAGCCTGCGGGGCTTCGTGCTTGCTCCCCTGGTGGTCTACCTCTTCACAGGCTCCCTCTTCCTCCTAGCGGGGTTTGTGTCGTTGTTCCGCATCCGCAGTGTAATCAAGCAGGGGGGGACCAAGACGGACAAGCTGGAGAAGCTGATGTTAAGGCTGGGCCTCTTTACCGTCCTCTACACGGTCCCTGCCGCGGTGGTGGTGGCCTGTCTGGTGTACGAGCAGCACCTCAGGCCCCAGTGGGACAGGGGTCTTTCCTGCTCCTgccaggctgagagagagaggctaggccTAGGGCCAGACCACGCCATCTTCATGCTGAAGTACTTTATGAGCCTGGTGGTGGGGATCACCTCGGGGGTGTGGGTGTGGTCGGGGAAGACTCTGGAGTCGTGGAGGAGGTTCCTGGGGAGGTGCTGTTGTTCATGTCCCTGCTGGGGCCACAAACCGTCCAGCGCGTCTGTATACAGCGAGGCCAGCACATCCCTCACGACACGCACCGGGCTGCTCCCCTCGCAGTCTGAGCACAAGTCCCTGTCGCACCCATCTGTGTGACCAGACTGGATGGacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactgg
>XM_036982441.1
AAAAGGAATGAATGAATTGAGTTGGTCACAACACTACTTTAAACATTGTCTAACTTTACTGGTGATGTTACATAGATTGTAGGCCTATAAAAATAAGGAATGATATTACCTTATGTGATAAGTAGGTTATGGGTAAAGAATGTACTGATTGAGTCGTTCAGGGTGTAAGCAGATTCCTATTGGAGAGGACGCAGCCCTGTGGGCGTGGCTGTCCAGAGTAAGCGGCCACGGTGTTGTTAGTCGGTATGGTTAGGAGCCGGAGCAAGAAGACGCACGAGGGAAGACAGTCGTGGAGTGTAGGTTTTTTTCTGAGAATAGGAGGCTGTTTCGCTAAATATTGTTGAAAGAAAAAGTGTGGCGCAAGGATTAGGCGTTGCTGCCTGAAAATTCCGTCTGCATTATCGAGTCGAAATGGACTTTATTTGATTGCACCGGAGGCGCGTTTTCTAAAGGTACACTGGGAGTGAATTTAGTGGTGGCAAGATTATCAGATGGCGCTTCTCTCTTTGATTGGCATTGCATATTGATGAGGTAGCTTACATTTTCCCGTGTGATCGACTTGCGTTGGAGGAGCTTCCATGGCGACCATGACGCACATCTGCCCTCTTTACATCAGCGTTCCGTGCCTACTCCTGCTGATGCGCGCACTACTGGTGCGCGCTGCCTCCAAGGCCATCGTGTGTGAACCCATCACGGTCCCCATGTGCAAGGGCATCGGCTACAACCTGACCTACACGCCCAACCAGTTTAACCACGACACTCAGGACGAGGTGGGGCTGGAGGTGCACCAGTTCTGGCCGCTGGTGCGcatccactgttcccctgacctGCTCTTCTTCCTCTGCAGCATGTACACCCCAATCTGCATCCCGGACTATCGCAAGCCTCTGCCCCCGTGCCGCTCCGTGTGCGAGCGGGCCAAGCGTGGCTGCTCCCCCCTGATGAGCCAGTATGGGTTTGAATGGCCCGAGAGGATGAGCTGCGAGGGGCTACCAGAGCTGGGTGATGCTGACCTCCTCTGTATGGACCGGAACAGCAGTGACGCCACTACTCTGTCCCCAGGCCCGGCCTTCCCCCCGAAGCCTACCCCCAAAGCCCCCTACCGCAACCCAGCCCGCCGCAGGCCGCATCTCCTGCCCAAACCCcaccacagtcaccaccaccaGGACTGTGAACAACGCGGCTGCCGCTGTCGCCACCCCCTGGTGTCCGTCAAGCATGAGGCCCGCTCACTGTACGGCCGCGGCGTCCACACAGGCCCCGTGGAGAACTGCGCCCAGCCCTGCCGTCAGCCCTACTTCACCCCAGACGAACACGCCTTCACCTCCCTCTGGATCGGCCTGTGGTCGGTCCTCTGCTTCGTCTCGACCCTAACTACGGTGGTCACGTTCCTGATTGACCGCGACCGCTTCTCCTACCCCGAGCTGCCTATCGTCTACCTGGCTGCCTgctacctcttcatctccctggGATACATGGTGCGGCTGGCGGCGGGCCACGAGCGTGTGGCGTGCTCCGAGGACGGCGGGCATGTGCTGTACGACGCTTCGGGCCCTGCCGGCCTGTGCACCTTGGTGTTCCTGCTGGTCTACTTCTTTGGCATGGCCGGCGCAATCTGGTGGGTGGTGCTCTCGCTCACCTGGTTCCTGGCGGCGGGTATGAAGTGGGGCAACGAGGCCATCGCCGGGTACTCGCAGTACTTCCACCTGGCCGCCTGGCTGGTGCCCAGCGTCAAGACCATCGCCGTGCTGGCCCTGAGCGCTGCTGACGGAGACCCTGTGGCAGGGATATGCTACGTGGGCAACCAGAGTGTGGAGAGCCTGCGGGGCTTCGTGCTTGCTCCCCTGGTGGTCTACCTCTTCACAGGCTCCCTCTTCCTCCTAGCGGGGTTTGTGTCGTTGTTCCGCATCCGCAGTGTAATCAAGCAGGGGGGGACCAAGACGGACAAGCTGGAGAAGCTGATGTTAAGGCTGGGCCTCTTTACCGTCCTCTACACGGTCCCTGCCGCGGTGGTGGTGGCCTGTCTGGTGTACGAGCAGCACCTCAGGCCCCAGTGGGACAGGGGTCTTTCCTGCTCCTgccaggctgagagagagaggctaggccTAGGGCCAGACCACGCCATCTTCATGCTGAAGTACTTTATGAGCCTGGTGGTGGGGATCACCTCGGGGGTGTGGGTGTGGTCGGGGAAGACTCTGGAGTCGTGGAGGAGGTTCCTGGGGAGGTGCTGTTGTTCATGTCCCTGCTGGGGCCACAAACCGTCCAGCGCGTCTGTATACAGCGAGGCCAGCACATCCCTCACGACACGCACCGGGCTGCTCCCCTCGCAGTCTGAGCACAAGTCCCTGTCGCACCCATCTGTGTGACCAGACTGGATGGacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactgg
>TU652677
GGGAAGACAGTCGTGGAGTGTAGGTTTTTTTCTGAGAATAGGAGGCTGTTTCGCTAAATATTGTTGAAAGAAAAAGTGTGGCGCAAGGATTAGGCGTTGCTGCCTGAAAATTCCGTCTGCATTATCGAGTCGAAATGGACTTTATTTGATTGCACCGGAGGCGCGTTTTCTAAAGGTACACTGGGAGTGAATTTAGTGGTGGCAAGATTATCAGATGGCGCTTCTCTCTTTGATTGGCATTGCATATTGATGAGGTAGCTTACATTTTCCCGTGTGATCGACTTGGTGAGTTATACATTTGATCAACTTGTTTCATCACTGTATTTC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0021531 spinal cord radial glial cell differentiation biological_process
GO:0048794 swim bladder development biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0007409 axonogenesis biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982442.1 False 2401 mRNA 0.59 2 8888012 8890717
XM_036982441.1 False 2510 mRNA 0.58 2 8888013 8890717
TU652677 True 327 lncRNA 0.42 1 8888290 8888616

Neighbor

gene id symbol gene type direction distance location
LOC110527270 LOC106574807 coding upstream 261130 8620663 ~ 8626882 (+)
LOC110527268 LOC106575873 coding upstream 278149 8608684 ~ 8609863 (+)
LOC110527267 LOC106575871 coding upstream 289672 8597362 ~ 8598340 (+)
LOC118965341 LOC106575870 coding upstream 295150 8590381 ~ 8592862 (+)
LOC110496917 LOC106595105 coding upstream 301298 8585033 ~ 8586714 (+)
LOC110512356 LOC106575836 coding downstream 19974 8910691 ~ 8912800 (+)
LOC110527273 LOC106574813 coding downstream 263220 9153937 ~ 9159959 (+)
LOC110515808 LOC106575810 coding downstream 294558 9185275 ~ 9664625 (+)
LOC118965238 LOC106575811 coding downstream 773965 9664682 ~ 9669888 (+)
LOC110527090 LOC106575822 coding downstream 854624 9745341 ~ 9758984 (+)
G572465 NA non-coding upstream 9965 8877847 ~ 8878047 (+)
G572457 LOC106593457 non-coding upstream 23098 8864628 ~ 8864914 (+)
G572379 NA non-coding upstream 129902 8757761 ~ 8758110 (+)
G572377 NA non-coding upstream 130428 8757248 ~ 8757584 (+)
G572376 NA non-coding upstream 130972 8756816 ~ 8757040 (+)
G572470 NA non-coding downstream 12140 8902857 ~ 8903491 (+)
G572472 NA non-coding downstream 13883 8904600 ~ 8905193 (+)
G572473 NA non-coding downstream 17368 8908085 ~ 8908700 (+)
G572475 NA non-coding downstream 28061 8918778 ~ 8919645 (+)
G572567 NA non-coding downstream 129174 9019891 ~ 9020138 (+)
G572315 NA other upstream 237114 8649980 ~ 8650898 (+)
G570834 NA other upstream 747250 8140282 ~ 8140762 (+)
G570875 NA other upstream 802259 8084271 ~ 8085753 (+)
G570868 NA other upstream 808672 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 816454 8063107 ~ 8071558 (+)
G572476 NA other downstream 31618 8922335 ~ 8922794 (+)
G572449 NA other downstream 39392 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1075950 9879599 ~ 9980430 (+)
G573366 NA other downstream 1237404 10128121 ~ 10132016 (+)
LOC110527289 LOC106590510 other downstream 1288702 10173615 ~ 10233047 (+)

Expression


Co-expression Network