LOC110512355 (LOC106575834)


Basic Information

Item Value
gene id LOC110512355
gene name LOC106575834
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8902833 ~ 8910580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982443.1
AAATGGGCCGTTCTTGAGGGCGTTCCTTCCTAGTTGGCTTTGGCTGGAGTGGGAATCAGCTGTTAGCAGGCTAGCTTGTCGTCTCAAATCTGAGCATTATACATTTCTGTGTACGGTGAACGACCATACCTAGAACATTTGCTGAGACGAAGGAATTCGGCATATTCTCTGACTGCAATGCAGCGCAAGAATAGCTAGATCAAGTGGACCGGCATAAATAGCCAGTTAGCTGACGCCTGGATTAGCGTTAGCCGGGTGTAGGGCTAGCTAGCAAACTACGTCTGGTTTATGAAGACCAGATTTATGTTTTTTAACGTATCAGCTGTCTAGCAGCTTCAGCTAGGCTTTTTAAAACTGAGTATAACGTGTTGCTATTAACGGTTAAACCGGTGTCCTAGCGTTGCCAGCCTTTGGATTAGTTTAGTGGTCAAGCCTGTATCTGGCCGACGTATCAATGCGCTACTCGCCATGCCTTTGCGCACACGCCCTGAACAAGACAGGGATTCAACTGTTCAGTTTGAattgtgtgttgtagatatgaaCCCCGATATGTGGCTGCTACTCATGTATTTAAAATTGAATGTGTCATTTTGAGACCAGACATCACTGACAGTGGTTCTGTCTGATGTTATAGACGAGTGGACGGTTCTTTCAGATATCTGGGGTGTAGTCAGTAGTAGGACTTTAGCAAATTGTTTAATCATGGGGGCTACAGTGTCATGCTGCATGTCCCCCGGCGGGAGTCCAAAGCTTGCAAGGAGAGCAGTCGAGCTCGACGACTACCCAATAACCACCACTGGCGACGACGTAAGCGAGGACACGGGCACCTATCTGCAGCACATCAGCGATAGAGAGGTCCCGGATGAATTGGCGCAGGAGTCGAACCCATCCGATAATGCCAGAGCCAGCACAATCTTCCTCAACAAGTCTCAGACTGATGTGCGGGAGAAAAGGAGAAGTAACTACTTAAGTAATCATCACACGTCTCCTGGGTTATCTAAAAAGTACAGCTCCTGCTCCACAATATTCCTTGACGATAGCACGGTCAGCCTGCCCAACCTGAAGAGTACGGTCAAATGtgtcACGTTGGCGATATACTATCACATAAAAAACAGGGATTCAAACCGTTCTCTGGACATTTTTGATGAGAAGATCCACCCATTAACGagAGAGAAGGTTCCAGAAGACTACTACAGCGTGGACCCTGAACACAAGCTCATCTACCGCTTTGTCCGCACGCTCTTCAGCTCGGCCCAGCTGACTGCTGAGTGTGCCATCGTCACCCTGGTGTACCTGGAGCGTCTGCTGACCTACGCTGAGATGGACATCTGTCCCTGCAACTGGAAGCGGATCGTACTGGGAGCCATCCTGCTGGCGTCCAAGGTGTGGGACGACCAGGCCGTGTGGAACGTAGACTACTGCCAGATCCTCAAGGACATCACCGTGGAGGACATgaatgAGATGGAGAGGCACTTCCTGGAGCTGCTTCAGTTCAACATCAACGTGCCGGCCAGCGTCTACGCCAAGTACTACTTTGACCTGCGCTCCCTGGCCGACGACAACAACCTCAACTTCCCCCTTGAGCCACTTGACAACCAGCGAGCCACTAAACTGGAGGCTATCTCCAGACTGTGTGAGGACAAATACAAGGATCTGGGCAAGGTGACCATAAGGAGGTCCCTCAGCGCAGACAATCTGGTGGGTGTCCGAACCACCCACGCCGTGCTGTCCTAAAGCTGGACCTGCTACACACACAGGACAGGCTGAGGATGCACCGAAGGTCTTCCTAAACTAGACACTCACTGGCACCATCGACACACACAGCTGGTCCCAAATCACGCCCAGATCTGTATGGTGGCAGCTCCACCACTGATACTTACTCATACACTCCAGATCTGCAAGAAGGGATGGAGTGTCTGACACCACACACTGACCATGGTGAGGAAGCCTCTAACTACCCTGTGGTGTAGTTTGGCACACGGACAGATGGTGATGTAGGGCGGTTTTCTTTGCTTACTGTGTAGGCCCTTTAGCTGGGAAATGTATCGGTTTTTAATTGAACATATTTTCAGTTGCTGTTTATTTCAAATAAACCGTAATAAACTATCAAATCTG
>TU652748
ATGTAGTTACTAAAAAATTGTTCCCAGGCTATCTCTGGGCTGTAATAAGTGTTGTTGCGTTCCCAGGCTATCTCCAGACTGTGTGAGGACAAATACAAGGATCTGGGCAAGGTGACCATAAGGAGGTCCCTCAGCGCAGACAATCTGGTGGGTGTCCGAACCACCCACGCCGTGCTGTCCTAAAGCTGGACCTGCTACACACACAGGACAGGCTGAGGATGCACCGAAGGTCTTCCTAAACTAGACACTCACTGGCACCATCGACACACACAGCTGGTCCCAAATCACGCCCAGATCTGTATGGTGGCAGCTCCACCACTGATACTTACTCATACACTCCAGATCTGCAAGAAGGGATGGAGTGTCTGACACCACACACTGACCATGGTGAGGAAGCCTCTAACTACCCTGTGGTGTAGTTTGGCACACGGACAGATGGTGATGTAGGGCGGTTTTCTTTGCTTACTGTGTAGGCCCTTTAGCTGGGAAATGTATCGGTTTTTAATTGAACATATTTTCAGTTGCTGTTTATTTCAAATAAACCGTAATAAACTATCAAA
>TU652745
CCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCCCACCAGTCAGTTGGCCCCACCAGTCAGTTGGCCATCACAGGGAGTTTCACTTTGGGCATGTTTAGTAGTTAAGTGTTGTGGCGCGTTGAGACCTGACGTGAGTAAAAGAGACGCTTGTTCTGCATAATAATCTATTGTCTCCTGATGAACACCTGGCCCTGGTAACGGTGTTACTGTGTCCTGCTGAACACCTGGCCCTGGTAACGGTGTTACTGTGTCCTGCTGAACACCTGGCCCTGGTAACGGTGTTACTGTGTCCTGCTGAACACCTGGCCCTGGTAACGGTGTTACTGTGTCCAGCAGTGTCCGATGAGACCGTCTCATTTACTGTGTCCAGCAGTGTCCGATGGGACCGTCTCATTTACTGTGTCCATCCTTCCCCAAGGTGTACCTGGAGCGTCTGCTGACCTACGCTGAGATGGACATCTGTCCCTGCAACTGGAAGCGGATCGTACTGGGAGCCATCCTGCTGGCGTCCAAGGTGTGGGACGACCAGGCCGTGTGGAACGTAGACTACTGCCAGATCCTCAAGGACATCACCGTGGAGGACATgaatgAGATGGAGAGGCACTTCCTGGAGCTGCTTCAGTTCAACATCAACGTGCCGGCCAGCGTCTACGCCAAGTACTACTTTGACCTGCGCTCCCTGGCCGACGACAACAACCTCAACTTCCCCC
>TU652744
CTGGAGTGGGAATCAGCTGTTAGCAGGCTAGCTTGTCGTCTCAAATCTGAGCATTATACATTTCTGTGTACGGTGAACGACCATACCTAGAACATTTGCTGAGACGAAGGAATTCGGCATATTCTCTGACTGCAATGCAGCGCAAGAATAGCTAGATCAAGTGGACCGGCATAAATAGCCAGTTAGCTGACGCCTGGATTAGCGTTAGCCGGGTGTAGGGCTAGCTAGCAAACTACGTCTGGTTTATGAAGACCAGATTTATGTTTTTTAACGTATCAGCTGTCTAGCAGCTTCAGCTAGGCTTTTTAAAACTGAGTATAACGTGTTGCTATTAACGGTTAAACCGGTGTCCTAGCGTTGCCAGCCTTTGGATTAGTTTAGTGGTCAAGCCTGTATCTGGCCGACGTATCAATGCGCTACTCGCCATGCCTTTGCGCACACGCCCTGAACAAGACAGGGATTCAACTGTTCAGTTTGAattgtgtgttgtagatatgaaCCCCGATATGTGGCTGCTACTCATGTATTTAAAATTGAATGTGTCATTTTGAGACCAGACATCACTGACAGTGGTTCTGTCTGATGTTATAGACGAGTGGACGGTTCTTTCAGATATCTGGGGTGTAGTCAGTAGTAGGACTTTAGCAAATTGTTTAATCATGGGGGCTACAGTGTCATGCTGCATGTCCCCCGGCGGGAGTCCAAAGCTTGCAAGGAGAGCAGTCGAGCTCGACGACTACCCAATAACCACCACTGGCGACGACGTAAGCGAGGACACGGGCACCTATCTGCAGCACATCAGCGATAGAGAGGTCCCGGATGAATTGGCGCAGGAGTCGAACCCATCCGATAATGCCAGAGCCAGCACAATCTTCCTCAACAAGTCTCAGACTGATGTGCGGGAGAAAAGGAGAAGTAACTACTTAAGTAATCATCACACGTCTCCTGGGTTATCTAAAAAGTACAGCTCCTGCTCCACAATATTCCTTGACGATAGCACGGTCAGCCTGCCCAACCTGAAGAGTACGGTCAAATGtgtcACGTTGGCGATATACTATCACATAAAAAACAGGGATTCAAACCGTTCTCTGGACATTTTTGATGAGAAGATCCACCCATTAACGagAGAGAAGGTTCCAGAAGACTACTACAGCGTGGACCCTGAACACAAGCTCATCTACCGCTTTGTCCGCACGCTCTTCAGCTCGGCCCAGCTGACTGCTGAGTGTGCCATCGTCACCCTGGTACGTATGCCATCGTCACCCTGGTACGTATGCCACCGTCACCCTGGTACGTATGCCACCAGTCAGTTGCCCCACCACGTATGCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCACCAGTCAGTTGCCCCCACCAGTCAGTTGCCCCCACCAGTCAGTTGCCCCC

Function

NR:

description
PREDICTED: cyclin-Y-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982443.1 False 2115 mRNA 0.50 10 8902833 8910580
TU652748 False 560 lncRNA 0.48 1 8902837 8903396
TU652745 False 982 TUCP 0.59 2 8903560 8905450
TU652744 True 1476 TUCP 0.50 7 8905844 8910537
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965236 LOC108246765 coding downstream 26928 8838510 ~ 8875905 (-)
LOC110511685 LOC106575825 coding downstream 80374 8759431 ~ 8822459 (-)
LOC110527269 LOC106575875 coding downstream 268459 8627519 ~ 8634374 (-)
LOC110527271 LOC106575866 coding downstream 280926 8616126 ~ 8621907 (-)
LOC110527272 LOC106575874 coding downstream 289731 8612105 ~ 8613102 (-)
LOC110495599 LOC106574945 coding upstream 2102 8912682 ~ 8920478 (-)
LOC110514048 LOC105023143 coding upstream 23215 8933795 ~ 8994413 (-)
LOC110527274 LOC106590732 coding upstream 260114 9170229 ~ 9182728 (-)
LOC118965240 NA coding upstream 1069692 9975244 ~ 9986394 (-)
LOC110527283 LOC106575688 coding upstream 1077176 9987756 ~ 9996037 (-)
G572517 LOC106574888 non-coding downstream 1609 8888770 ~ 8901224 (-)
G572512 NA non-coding downstream 26442 8876079 ~ 8876391 (-)
G572444 NA non-coding downstream 71382 8831241 ~ 8831451 (-)
G572441 NA non-coding downstream 75304 8827311 ~ 8827529 (-)
G572438 NA non-coding downstream 77111 8825438 ~ 8825722 (-)
G572521 NA non-coding upstream 10157 8920737 ~ 8920975 (-)
G572529 NA non-coding upstream 26116 8936696 ~ 8936990 (-)
G572539 NA non-coding upstream 48119 8958699 ~ 8959020 (-)
G572546 NA non-coding upstream 58307 8968887 ~ 8969320 (-)
G572555 NA non-coding upstream 87526 8998106 ~ 8998515 (-)
LOC110527256 LOC105023165 other downstream 563927 8338327 ~ 8445186 (-)
LOC110495554 LOC106574922 other downstream 669829 8231826 ~ 8238048 (-)
G571966 NA other downstream 764152 8137704 ~ 8138681 (-)
G571953 NA other downstream 815268 8086211 ~ 8087565 (-)
G573179 NA other upstream 783846 9694426 ~ 9694843 (-)
G573253 NA other upstream 964525 9875105 ~ 9877360 (-)
LOC118965242 LOC106574692 other upstream 1349086 10259338 ~ 10325584 (-)
G573743 NA other upstream 1439129 10349709 ~ 10350718 (-)
G573769 NA other upstream 1497561 10408141 ~ 10456035 (-)
LOC110512355 LOC106575834 other upstream 164 8902833 ~ 8910580 (-)

Expression

LOC110512355(LOC106575834) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110512355(LOC106575834) Expression in each Bioproject

Bar chart with 21 bars.
LOC110512355(LOC106575834) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network