LOC118965238 (LOC106575811)


Basic Information

Item Value
gene id LOC118965238
gene name LOC106575811
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9664682 ~ 9669888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052497.1
AGGGAGGGGGGGTGGTAGTATCGGTGTGTGGTTTAAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACTAGTCCTCTATAGAGGTAGTAGTTTAACCACAGAACCAGTGGTTAAACTAAGCCCACTGACAGTCAgctagcctcctctctctctccccctgacaACTCTCAGTTCACCTCTATACAGCAATAGGATTACCAACTCCTCATTCTGAATCCAAAATGTCAAGGTCCAGAGATTTGACACGGAATCTTCTAGTGTGACTTCACCACAAGTCTCTCCGTTACTCTGAGACGAGGGCTACATGCAGATCAGTTGTCAAATCAGAAATGTAATTCATGACTTAAAATGGCTGTTTATTAATTAACTCAATTCAATTCTGAACTGACCCCAACCTTAATGTGAAGGGTATGACTAGTGCCAAatggaaacattttttttatgatatttaactaggcaagtcagttaagaacaaattcttatttacaatgacgacctactcCAACAACACTGGTCCAATttgcgcctccctatgggactctcatTCATGGCAGGTTGTGATACTGCTTGGTCTGTAGGgacgcctttagcactgagatacagtgccttagaccgctgcgccactcgggcaGGACCAGTGATTACAAGTCATGTGTAACTGACCATTTAGAATAAATAGTGACTTAGGACATTTACCTGTACTACTGATGCCTCATAAACACCTATGAGAATACTGCCAGACAGCTTCTGCTGCCTAGTGGAACGTCCAGGACCCCCGGTAAACTTCTGTTTCAGACTCATTTGGTTACACTGCTGTTATGGAGCCATGCATGTTCGTTTTTTCATTTCCTTCTCGATTTGCCTTTACTTTGTCTATATTTCGTCGTACAGCATAAGGAGGCGTATCCCAGCTGTCCTTGTGGCAGAGAAGAGGGTTATTGATACATGTTTCTGCTGcattgtgggtgtttgttttagTCCATATGGAGCACATTGATCCAACGAGCAGGaagtgaaaaatatttttttaaataacgtgTTTTTTCTTAGTTGTAATAATCCAACCACGTGATTATTTCAAatgcatttcacatttccaccTACAAGGTTGAGATATGTGaaggaacagaacagagagaaactTGGGGACATGGTGAAGTACTGAATGAGAAGTCTTCATATGTATGTGCTATTTGTCTGCTTCCTGCCGTTCTACTGCCTCTGGTTATGATGACAACTATTTTGTTCTGCCTTTGGACCCAAATAGTTCCGCAAACTGGAATTAACATTTCATTTCAATGTGAAGTATTCATGTTGTGTTTAACTTGTTTTTCACCAAGGACTGAAATGACAGATTGCAGATTCTATGATTTTCAAAACCAGTGAAAAACCAGTCTCTCTTTTTACGTGTTCATATTAGAAGGGCCTGTTTTGACCCTGAGCcagtcctaatatggacaccatagctGCCAACAGTTTGGCTCAATATTCACCGGCCGCCATTTTGTTCAAATAGCAACGCTAGTTTTTGACGTCTCTTTATCTACCAGAAAACGACATCTGTACTTGGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTATACAGAATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTGGTATTCTCCTATACAATATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTCGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTGGTATTCTCCTATACAATATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTCTCCTGTACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTCTCCTAAACAGTATGTAGTTGGAAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGGTTTTGGCCCCTTAGTATTctcctatacagtatgtagttggaAAGTATTCTATGACACAATCAGCAGCACAAGTACTGTATCCTCCACCACTGCAGTAGAACTGTATTAGCTATGCCTGTTGTACCTAATACTATATCATCATGCATGATACCTCAATGTGAGTGTTATTGCTCTTTACCCTGAGTATTTGTTAGTTCAATTAATAGTATTTTCCATTTTTGTCCCGAGGAAAGATGGTTTGAGGGACAGCTTCTATTGCTGTTTGGAGATGGAAAGAAATCAGTAGCACAAATTCTGTAGTAACTTTCTGTTGTTAAGGTAAAACACACCATGGAAAAGGTTTAAGTGTTTAATACCTTACACCACTGTATACAGTTAATTCACAAACATACACTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAGAATAGGATTCATCTTTACTGTTCAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGCATAGGATTCATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGCATAGGATTCATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAAGATTAATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGCATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGCATAGGATTCATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAAGATTAATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTAATCTTTACTGTCAAATATAGGATTCATCTTTACTGTTCAGTATAGGATTCATCTTTACTGTTCAGTATAGGATTCATAGTCATCCTGGCTTCTACTGTTAATTTAGTCATATTTATCATGACCGATGTTTTGGTCTGTCACtgttttttaaaaactatttcaACATATTCAAAAATACTTCtgtttattttattgtgttgATGAAGTGTATTTAATAACATGAATGAGGGTTTTTACAGACGCAGCACACGTCACCTCATTCAGTATTATCTTCGGATGATTTTTCAATACATCCTGATAATTTGACACAATCTTAATTGCATCTTAATTGCACAAATTGTCGTATTAGAGAGGACGCATTCTTTCGGTTACATTTTTTGTGTTGAAATTGATATACCTATCAAACCAATGTAATTGTACAGTCGTTTGGACTTTCCTCCAGATTGAACACACTATTgtcccatgacaaaatgtgaatAGTATTTTTATAAAGCACAGAGACGAGGCGACCCGCTGACATGTGTCCATAGGAGGAGAATGCTTTGACCTTTTCCCActcttctctctgtttcacttTCTTTTCTTTTCCTGTTCTTTTTCCCTTGTCTGTTTATCAGGTGTCAGCGTTAGATATGACAGAGCTTCTGTGTGTACGGTATGTGTACTTTGGGTAgtacattttgatttgaaatgtaaaaCACCCTTGTTGGGTACTCGCCTGTGAAACTGGCTAGTTGACCTGTATGAAGCATCTCTCTGTGAGTTCTCTATTTAATATCTGTGTTGGGGTTAACAATGGTTTATATCTTCTTcttttttacctctctctctctctctctctctctctctcactctctccctctctcaaaatacttcagagcagtgttgccaactcaaCCTGACAAGATATGTCTCAGCCCATTTTCTATTTCAGTGGTGTGCTATCCAGTCCATCTTTCTGCTTGTTTATCAGTCCAGTGTGCACATGTACATTCACCCCTGAGCCAACATTTTCCATGATTTCCATGTTCGAAGACATCAAGGTTGAATTGGAAGATGTAGAAATTGAGATCAATATCGTGAGGCACCTCccacttgactggcctgtacagtaCGTGAACACAAACTACTAAAGTTATTTTGATGTAATGTTTGATTTAACTGCATGCTTATTTATAAATGTCGTCAAACACTGACAGAGACACAGTGTCCCTCCCTTTTTCCCGGTTCAGCCTCTCTAGCTCCTACTCCCTGCCTCCCCACAGAACGTTGGCAGCACTGGCTACAACTCTCCACTGAACTTTAGACCATACCTAAAGCTTGATATCATGGAAGTACTGTTCCTCATATTTGTTACATGAATctgtcaaaaaatatatttttaatttaataTAAATAAAGATTGATTCAATATTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106575811

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052497.1 True 5162 mRNA 0.38 2 9664682 9669888

Neighbor

gene id symbol gene type direction distance location
LOC110515808 LOC106575810 coding upstream 57 9185275 ~ 9664625 (+)
LOC110527273 LOC106574813 coding upstream 504723 9153937 ~ 9159959 (+)
LOC110512356 LOC106575836 coding upstream 751882 8910691 ~ 8912800 (+)
LOC118965237 LOC106574888 coding upstream 773965 8888012 ~ 8890717 (+)
LOC110527270 LOC106574807 coding upstream 1037800 8620663 ~ 8626882 (+)
LOC110527090 LOC106575822 coding downstream 75453 9745341 ~ 9758984 (+)
LOC100135948 LOC100194643 coding downstream 93314 9763202 ~ 9769681 (+)
LOC110528748 acadl coding downstream 106151 9776039 ~ 9781629 (+)
LOC118965239 LOC106575823 coding downstream 113188 9783076 ~ 9876545 (+)
LOC110497049 LOC106575743 coding downstream 209711 9879599 ~ 9980430 (+)
G572788 NA non-coding upstream 104381 9554962 ~ 9560301 (+)
G572773 NA non-coding upstream 147764 9516465 ~ 9516918 (+)
G572728 NA non-coding upstream 292726 9369311 ~ 9371956 (+)
G572715 NA non-coding upstream 316825 9343803 ~ 9347857 (+)
G572716 NA non-coding upstream 318619 9344306 ~ 9346063 (+)
G572833 NA non-coding downstream 7080 9676968 ~ 9678393 (+)
G572838 NA non-coding downstream 17381 9687269 ~ 9687644 (+)
G572851 NA non-coding downstream 49188 9719076 ~ 9719320 (+)
G572917 NA non-coding downstream 196419 9866307 ~ 9866539 (+)
G572449 NA other upstream 730804 8930109 ~ 8933878 (+)
G572476 NA other upstream 741888 8922335 ~ 8922794 (+)
G572315 NA other upstream 1013784 8649980 ~ 8650898 (+)
G570834 NA other upstream 1523920 8140282 ~ 8140762 (+)
G570875 NA other upstream 1578929 8084271 ~ 8085753 (+)
G573366 NA other downstream 458233 10128121 ~ 10132016 (+)
LOC110527289 LOC106590510 other downstream 509531 10173615 ~ 10233047 (+)
G574038 NA other downstream 1206219 10876107 ~ 10877184 (+)
G574122 NA other downstream 1333616 11003504 ~ 11076001 (+)

Expression


Co-expression Network