LOC110527090 (LOC106575822)


Basic Information

Item Value
gene id LOC110527090
gene name LOC106575822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 9745341 ~ 9758984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982456.1
GCtcgaagtaaccaaaaaaggccTGTAATGCGGACTCCTTCACACCAGGTGGCCACACTGACGTTGTAAAGTCCATTCAACGTGTTTGTCAGTGAAGCGATCAAGAACATTATAAACATCAACCGTCTGCAGTGATTCCTTCTCGTTTGACCAAAAAACTTGAGTTTTAGTGGGAGCGGAGGGGAGTTGGAAGAAAATGGACCAGAGAGCTTGGAAGAACCCATACGCAGACTATGATGGGAACCCTGCATCTGTGCAAGAACTATTTGATTCACAAGGAAAGCTCACAGCAGAGTTTGCAGGGCGGTTGAGCAATGCCATCAGTCAGCTGTTGATGCACATGGAGAATGGGCTCAAGTCTGCTGACCCTAGAGACTGCACTGGCTACACTGGCTGGGCAGGCATCGCCTTGCTTTACCTGCACCTCCACGGTGTGTTCGGGGAGCCTTCATTCCTGCAGAAGGCTCTGGACTACGTGGGCCACAGCCTGACGTGTCCGACGCGGCGACGTGATGTCACCTTCCTGTGCGGTGACGCCGGGCCCCTGGCCGTGGCTGCAGTGGTCTACCACAGAGTACAGAGGGCACAGGAGTCAGACGAATGCCTCAGCAGGCTGCTGCAGCTCCATCAGTCGGTGGTAATGGGCTCTGGGGCCAGCGGTCTCCCTGATGAGCTGCTCTATGGCAGGATGGGTTACCTCTACGCCCTGACCTTCATCAACCAGCAGTTTGGCCACGACAAGATCCCCATCCAGTACATCCAACAGATCTGTGAGGCTGTGTTAATATCGGGGGAGGGCCAGTCTCAGAGGTTCCGTTGTCAGGACCAGAGCCCTCTGATGTACGAGTGGTACCAAGAACAGTATGTAGGCCCCGCCCACGGCCTGGCAGGCATCTACTACTTCCTCATGCAGCCAGGCTATGTGGCGGGGGATGAGAGGGTCCACAGGCTGGTGAGGCCCAGCGTGGACCACGTCTGTCGACTCCGCTTTCCCACTGGGAACTACCCGCCCTGCATAGGGGACAACAGGGACCTGCTGGTGCACTGGTGTCATGGAGCCCCAGGCATTATCTACATGCTGCTGCAGGCCTACAAGGTGTTTGGAGTGGGCCAGTACCTGGAAGAGGCTCTACAGTGTGGGGAGGTGGTGTGGCACAGGGGCCTGCTGAAGAAGGGCTACGGCCTGTGTCACGGCGCCGCGGGTAACGCCTACGCCTTCCTGGCCCTCTACAAGCTCACCCATGACCCCAAGCACCTCTACAGGGCCTGTATGTTTGCAGACTGGTGCATGAACTACGGCAAACATGGCTGCAGGACACCGGACACTCCGTTCTCATTATTTGAAGGCATGGCTGGAACCATCTACTTCCTGGCAGACCTCCTCCAGCCCCTGAAATCAAAGTTCCCAGCATTTGAGGTGTAAAAGGTATCCCTGCTTACCCCTGGTCTCCTGCCTGCTGCTCTGGAAACTATCATACACATCCAAGCACctaatctctctccatctctctcacacacacaccgagacattttaaagaaacacacacaggcatataCACCGCAGAGTCACCTCTGCAGGTGATAATCAAGATGACTTTTTCCATCACAACAAAATCTTCCCACAGTCTCTCCTTATTGGCTGAACGAACAGTAATTGTGTGTTGTAGGGAGGGGGACCAGGGACAATCAGTGCAAGGGTGACATTTTGCACGAGCAAATGGCATTGAGCAGTGAGCAAAATAACCATAAGATATCAAATAGATGTGAAGGCAAATTATCCCATGTGAATTCCAAAAACTTCAACTCTCAATTGCATCGCACACATCGCATGCATTGCTCAGTTGACTAAACCCTGGCTAAATTCTTGCCTTCTTATAACACTACTTGTTGAAAAGTTCAAATTAAATCATGCTTTATAATGAGTTTTTTTATCATACAGATTGAGTTTTATGGTATTCTTTGCACAGAGCTGCACCTTTTTTTTTTGCGTGAGGAAAATGTCGCCCCTAGTCTAATATGTGCATGGTGCATGGGGGTTTGAAGTGTTATGCACTGAAACTGGCTCACTATTTTGTGTCTAGACATGGGGCATAAGCAGAGAGAACCACCTCGAGTGGATTGTTCATTTATGGACATCAATTCAATATTTACTTTTCATTCATTTTATGACGCAATGAGACTTCAGTTTGTCTAAGATGAAATTGACTAGGATTTGTTTGCTTGGGCTGGAGTCTGGTCAATGGGTCCACTCAACTCGGGACCATAATTACCCCCTAGGTGACGGGGGTTGGAgccctgtctccacctctcctgtCGGTCCCTTTTATCTGGCTCTGCTGTCCAGCTGTACTGTCTATGAATCAATAAAAATACCAAGGGGATTTGAGTACCGACCAATCTcctattaaaaaaaaatagtaaTAATCTTTGCTCCAACATTCATGTTTGTTAATTGTTAATTTTAGATTTCACCTTTTTTTTTTGAATAACCGGAATAGAAATTCCATGGTGTAGAGGATTTTTCATCTTTGCAGATTGTGGCTGCAATAGAAACTTTGTAGTAAAATGATTATACTGTGTGACAAAGTactacagtaaaactgtaatgACCATGTGGCGCAtcataagttgtgtgtgtgtgatgtacgCTTGTAACTCTACTGCTCATCTACGGTTTCTTCACGTTTCCATTGGCTAAATAATAAAACAAGGTATTTTttacatctcacctgtctgttaCCTTTGGTATTAAACTATTATTCATGGT
>XM_036982457.1
GTATGTCCTTTTAATCGACTGACTTTTAACATTCGGCcttttttgtgtgtatttagCGCAAAGATTCCTTCTCGTTTGACCAAAAAACTTGAGTTTTAGTGGGAGCGGAGGGGAGTTGGAAGAAAATGGACCAGAGAGCTTGGAAGAACCCATACGCAGACTATGATGGGAACCCTGCATCTGTGCAAGAACTATTTGATTCACAAGGAAAGCTCACAGCAGAGTTTGCAGGGCGGTTGAGCAATGCCATCAGTCAGCTGTTGATGCACATGGAGAATGGGCTCAAGTCTGCTGACCCTAGAGACTGCACTGGCTACACTGGCTGGGCAGGCATCGCCTTGCTTTACCTGCACCTCCACGGTGTGTTCGGGGAGCCTTCATTCCTGCAGAAGGCTCTGGACTACGTGGGCCACAGCCTGACGTGTCCGACGCGGCGACGTGATGTCACCTTCCTGTGCGGTGACGCCGGGCCCCTGGCCGTGGCTGCAGTGGTCTACCACAGAGTACAGAGGGCACAGGAGTCAGACGAATGCCTCAGCAGGCTGCTGCAGCTCCATCAGTCGGTGGTAATGGGCTCTGGGGCCAGCGGTCTCCCTGATGAGCTGCTCTATGGCAGGATGGGTTACCTCTACGCCCTGACCTTCATCAACCAGCAGTTTGGCCACGACAAGATCCCCATCCAGTACATCCAACAGATCTGTGAGGCTGTGTTAATATCGGGGGAGGGCCAGTCTCAGAGGTTCCGTTGTCAGGACCAGAGCCCTCTGATGTACGAGTGGTACCAAGAACAGTATGTAGGCCCCGCCCACGGCCTGGCAGGCATCTACTACTTCCTCATGCAGCCAGGCTATGTGGCGGGGGATGAGAGGGTCCACAGGCTGGTGAGGCCCAGCGTGGACCACGTCTGTCGACTCCGCTTTCCCACTGGGAACTACCCGCCCTGCATAGGGGACAACAGGGACCTGCTGGTGCACTGGTGTCATGGAGCCCCAGGCATTATCTACATGCTGCTGCAGGCCTACAAGGTGTTTGGAGTGGGCCAGTACCTGGAAGAGGCTCTACAGTGTGGGGAGGTGGTGTGGCACAGGGGCCTGCTGAAGAAGGGCTACGGCCTGTGTCACGGCGCCGCGGGTAACGCCTACGCCTTCCTGGCCCTCTACAAGCTCACCCATGACCCCAAGCACCTCTACAGGGCCTGTATGTTTGCAGACTGGTGCATGAACTACGGCAAACATGGCTGCAGGACACCGGACACTCCGTTCTCATTATTTGAAGGCATGGCTGGAACCATCTACTTCCTGGCAGACCTCCTCCAGCCCCTGAAATCAAAGTTCCCAGCATTTGAGGTGTAAAAGGTATCCCTGCTTACCCCTGGTCTCCTGCCTGCTGCTCTGGAAACTATCATACACATCCAAGCACctaatctctctccatctctctcacacacacaccgagacattttaaagaaacacacacaggcatataCACCGCAGAGTCACCTCTGCAGGTGATAATCAAGATGACTTTTTCCATCACAACAAAATCTTCCCACAGTCTCTCCTTATTGGCTGAACGAACAGTAATTGTGTGTTGTAGGGAGGGGGACCAGGGACAATCAGTGCAAGGGTGACATTTTGCACGAGCAAATGGCATTGAGCAGTGAGCAAAATAACCATAAGATATCAAATAGATGTGAAGGCAAATTATCCCATGTGAATTCCAAAAACTTCAACTCTCAATTGCATCGCACACATCGCATGCATTGCTCAGTTGACTAAACCCTGGCTAAATTCTTGCCTTCTTATAACACTACTTGTTGAAAAGTTCAAATTAAATCATGCTTTATAATGAGTTTTTTTATCATACAGATTGAGTTTTATGGTATTCTTTGCACAGAGCTGCACCTTTTTTTTTTGCGTGAGGAAAATGTCGCCCCTAGTCTAATATGTGCATGGTGCATGGGGGTTTGAAGTGTTATGCACTGAAACTGGCTCACTATTTTGTGTCTAGACATGGGGCATAAGCAGAGAGAACCACCTCGAGTGGATTGTTCATTTATGGACATCAATTCAATATTTACTTTTCATTCATTTTATGACGCAATGAGACTTCAGTTTGTCTAAGATGAAATTGACTAGGATTTGTTTGCTTGGGCTGGAGTCTGGTCAATGGGTCCACTCAACTCGGGACCATAATTACCCCCTAGGTGACGGGGGTTGGAgccctgtctccacctctcctgtCGGTCCCTTTTATCTGGCTCTGCTGTCCAGCTGTACTGTCTATGAATCAATAAAAATACCAAGGGGATTTGAGTACCGACCAATCTcctattaaaaaaaaatagtaaTAATCTTTGCTCCAACATTCATGTTTGTTAATTGTTAATTTTAGATTTCACCTTTTTTTTTTGAATAACCGGAATAGAAATTCCATGGTGTAGAGGATTTTTCATCTTTGCAGATTGTGGCTGCAATAGAAACTTTGTAGTAAAATGATTATACTGTGTGACAAAGTactacagtaaaactgtaatgACCATGTGGCGCAtcataagttgtgtgtgtgtgatgtacgCTTGTAACTCTACTGCTCATCTACGGTTTCTTCACGTTTCCATTGGCTAAATAATAAAACAAGGTATTTTttacatctcacctgtctgttaCCTTTGGTATTAAACTATTATTCATGGT

Function

NR:

description
PREDICTED: lanC-like protein 1

GO: NA

KEGG:

id description
K25210 LANCL1; glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982456.1 False 2767 mRNA 0.48 10 9745341 9758984
XM_036982457.1 True 2696 mRNA 0.48 10 9745475 9758984

Neighbor

gene id symbol gene type direction distance location
LOC118965238 LOC106575811 coding upstream 75453 9664682 ~ 9669888 (+)
LOC110515808 LOC106575810 coding upstream 80716 9185275 ~ 9664625 (+)
LOC110527273 LOC106574813 coding upstream 585382 9153937 ~ 9159959 (+)
LOC110512356 LOC106575836 coding upstream 832541 8910691 ~ 8912800 (+)
LOC118965237 LOC106574888 coding upstream 854624 8888012 ~ 8890717 (+)
LOC100135948 LOC100194643 coding downstream 4218 9763202 ~ 9769681 (+)
LOC110528748 acadl coding downstream 17055 9776039 ~ 9781629 (+)
LOC118965239 LOC106575823 coding downstream 24092 9783076 ~ 9876545 (+)
LOC110497049 LOC106575743 coding downstream 120615 9879599 ~ 9980430 (+)
LOC110527289 LOC106590510 coding downstream 414631 10173615 ~ 10233047 (+)
G572851 NA non-coding upstream 26021 9719076 ~ 9719320 (+)
G572838 NA non-coding upstream 57697 9687269 ~ 9687644 (+)
G572833 NA non-coding upstream 66948 9676968 ~ 9678393 (+)
G572788 NA non-coding upstream 185040 9554962 ~ 9560301 (+)
G572773 NA non-coding upstream 228423 9516465 ~ 9516918 (+)
G572917 NA non-coding downstream 107323 9866307 ~ 9866539 (+)
G572872 NA non-coding downstream 198064 9957048 ~ 9957419 (+)
G572948 NA non-coding downstream 221970 9980954 ~ 9981175 (+)
G572949 NA non-coding downstream 222629 9981613 ~ 9982021 (+)
G572449 NA other upstream 811463 8930109 ~ 8933878 (+)
G572476 NA other upstream 822547 8922335 ~ 8922794 (+)
G572315 NA other upstream 1094443 8649980 ~ 8650898 (+)
G570834 NA other upstream 1604579 8140282 ~ 8140762 (+)
G570875 NA other upstream 1659588 8084271 ~ 8085753 (+)
G573366 NA other downstream 369137 10128121 ~ 10132016 (+)
G574038 NA other downstream 1117123 10876107 ~ 10877184 (+)
G574122 NA other downstream 1244520 11003504 ~ 11076001 (+)

Expression


Co-expression Network