LOC110527289 (LOC106590510)


Basic Information

Item Value
gene id LOC110527289
gene name LOC106590510
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10173615 ~ 10233047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982490.1
CCAACTGTGAGACCCGGGGCGTTTTTACAAATGTATGACAACTTCAGAGCACAACAAATCTCAGCGCCGTGGAATGGTTGGCTCCTACACCAGGATGTGGGTCCAGGCCCATGGAGCCTTGGAGGACCTTCTGGTGGATGAGCACCCTCCCACTGCCCCTCGGCCGCTGAAGGACCGGCTGCAGGTCTTCCAGGGCCTGGCCACCTTCTACCTGAAGTACCTGCAGATCTTCCGCAGCCTGGAGTCTGTCTACGACCAGATAGTTCACCCCCAGAAGAGACGCATGGTCAGGCACGTGTTGGACGGCGTGATGGGTAGAATCCTGGAGCTCAAGAACGAGATGGTGGAGCTGGAGTTCTCAGAGTTCCACTACTTTGATGATGTGCTGCAGGACCTCAAGCTGACACCTGAGGACCTGGAGGTGCCCATCCCTCAGTATTTTGTGAGAGAGAAGATGCGTGTGCTGCGGGACAGAGAGAAGATGCTGGCTCATGTCATGGCTAAAGGGGGACACATTGAACAGGTTGAGCAGGAGGTGTCGGTTCAGACCATGTGTCTGGAGGAAGCTGTTCGGGTCCTTCAGGTTTGTGAGCGGGCACGGCAGGGTCGGCTCAGGCATCGCTTCATGAAGGAGATACGGCAGGCTGAGGAAGAAGGGAGCCAGGCCAAGAGCCAAACACCCATCAGCACCCTGGACCCCGACCAGGCTGCCACATGCATTCAGAAGGTTTGGCGGGGCTACAGTCAGAGGAAGAGGACCAGGAGAGAACGGCTGGAGGAGATGATATTTCTGGGAATGGTCCCtccagagcagcagcagcagaggccCAGCGTGGCCCAGCTGAAGGCCCAGCAGGTGGAGACGACTCGCAGGCTGGTCCAGGAGGAGAATGAGGCTGAGTATCAGAGGGCCCTGGTCAGCATCAAGGAGTCTGTGCGTGCCGTGGACGGCCCTGACCTACGGGAAACCCTGCAGGAGCAGATCAGACAGTGGTTTATCGAGTGCCGAGATGCCACTGGAAAGTTTCCTGACTTCCCCAATGCTGAGGATGGGGGATCAACAGCCATATTTGCACAGAAGACACCTGACCAGGTCGCTGCAGAATTAGCAgcgaaagaggaagagaagaagaggaaagaCAACATAAATAAAGATAAGAAGGGTGGGAAGGACCGCAAGGATCAGAAGAAAGACAAGAAGCGGAGAAGCAAACAGAAGAAAGGAGGAAAAGAAGAAGGAGAGgaggaggagaagggctgGAAAATGCCCCCGAGCAACTTCCTCCCTACTGTTGTGGAGGGAAACAAAATGTACAAAGacgtgTGGCAGGGGCGTGATGAAACACAGAACTTCCTGCAGCGGTTTGATGCCCAGCTGGTGCGTGAGGAGAAGAggttggaggtggaggaggaggtcagagtTCAGGTCGATGAGCTGATGAGACAGGAAGTGAAGAATCTCAAGCTGGCTGTGGACcgagagaaagggaagaagaagaagaagggaaaGAAAGGTGGCAAGAAGAAAAAGAAGAAAGGAAAGAAGGGcagtaagaagaagaagaagaaagagaaggatctGACTGCTGACAGaacccTTGAGTCTCTGTATGAAGAGCTGGTGCTGGAAGGCTTCTTGATTAGACCCTTGAACATCAAGCTCTCTGAGTACATTGgtgaGTTCAGCTACCTGGGTACGACCCTGCGCCAGGCAGACATTGAGCCCATGCCCTCTCTGTCAGACGTCAGACAGCTCATTGCCCTTTATGGGATCCTGCCTctgggatCCCAGTCCGTCCATCAGAAGGCTCCCCTGATGAAGACTCTGCTGCTGGCTGGTCCTGGAGGCGTAGGGAAGAGGATGCTGGTCCATGCTCTGTGCACTGAGACCGGGGGCAACCTCTTCAACCTGTCCCCCAGAAACCTGGCTGGGAAGTACCCCGGCAGGAGCTGCCTCCAGTACCTACTGCACATGGTCTTCAAGGTGGCTCGCCAGCTGCAGCCCTCTGTAATATGGATCGGAGATGCAGAGAAACCTTTTATAAGAAAGTCCCGAAGCTGGAGAAAGAGatgGGAGCCTAAGCGTCTGAAGAAGGACCTAGTCAAGGTGCTGAAGTCTGTGAAGCCTGAGGATCGTGTTCTGGTCGTAGGGATCCGGAGGCCCTTTGACGCAGACCTCAAGCCCTTCTGTAAAGTCTATAGGAAGATCATCCTCATCCCCAGACCTGACTATGCCTCCAGACTGGTGCTGTGGAGGGAGCTGCTGTGTGGCGGCGGTGCTCGCCTCACCCCCAACCTGGACCTGAGCTCCCTGGCCAAGGTGACAGATGGCTACACCCAGGGCCACATCCTGCAGGCTGTGAGGCAGGTGCTGACCCCTCGCAGGCTGGCCCAGCAGACTACCAGACCACTGACCGCTGAAGAGTTCATCCCTCCACTGGCCAGACAGGACCCCGTctacaaagaggaggaggaggcctttAAGATGTGGTACGGCAGGACACCTTTGGGTAAGAAGAGGGCACGGGCGGCCAAGGCCATCGAGGAGGAGGGAGAGTCGGGCAAGGACAAAGACAAGCGGGGCACTGGGAGGAAGACAGGGAAAGAAGAGAAAAGCAAGAAGAacaataagtaaatgtcaaagaCAAGAGACAGAAGTCGTCAACATTGGAGAGGTCTACAGACAGGGACTTTCAGGGGATGTGATTTACATTCCTACTTCTTAGATATGATGGACGATACATTTACTACCAGTCTATGACTGTAAATGTCATGACAACAGTATAACGGTAACAGTCGATCGTGTTATGATCATAATGACAAAAGTAGCTGTTTATCTTGTATGagaccagatataaagtatgtcaAATAAATCATTATTATCGCAGTGTAAATATTGAAGATAAGTGTTGTTGATTTTA
>TU653759
GACGGCGTGATGGGTAGAATCCTGGAGCTCAAGAACGAGATGGTGGAGCTGGAGTTCTCAGAGTTCCACTACTTTGATGATGTGCTGCAGGACCTCAAGCTGACACCTGAGGACCTGGAGGTGCCCATCCCTCAGTATTTTGTGAGAGAGAAGATGCGTGTGCTGCGGGACAGAGAGAAGATGCTGGCTCATGTCATGGCTAAAGGGGGACACATTGAACAGGTTGAGCAGG
>TU653760
GGTCCCtccagagcagcagcagcagaggccCAGCGTGGCCCAGCTGAAGGCCCAGCAGGTGGAGACGACTCGCAGGCTGGTCCAGGAGGAGAATGAGGCTGAGTATCAGAGGGCCCTGGTCAGCATCAAGGAGTCTGTGCGTGCCGTGGACGGCCCTGACCTACGGGAAACCCTGCAGGAGCAGATCAGACAGTGGTTTATCGAGTGCCGAGATGCCACTGGAAAGTTTCCTGACTTCCCCAATGCTGAGGATGGGGGATCAACAGCCATATTTGCACAGAAGACACCTGACCAGGTCGCTGCAGAATTAGCAgcgaaagaggaagagaagaagaggaaagaCAACATAAATAAAGATAAGAAGGGTGGGAAGGACCGCAAGGATCAGAAGAAAGACAAGAAGCGGAGAAGCAAACAGAAGAAAGGAGGAAAAGAAGAAGGAGAGG
>TU653758
AAGTTGGAAGCTAAACGTTGGTTCACAGGGTTGCTCTAAGGTTTAGGATAATGAGAGCTGGAAGGGAAGTGAGGGATACATAGTTTGGCGTTCCAAAGAGCAATTCCTGGtcgggtgattattttctctccACATTGAGATAACTGCTCCATGACATGAACCACCCCTAATTAGTGGAAGTATCTGAGGCATTTAGTTAACCATTAGGAGGGTCTGCCCTCTGGTGACCTTGTTGGAGGTCTGCCATCTAACTCTCAGTGTGACATAGTACAATTCATCAAGAATGATACATCTGTAATGATAATTTAAGAACAGGAAGTATCTTTAAAACATGCTATTTATTGTAGAGATGCCACTGGAAAGTTTCCTGACTTCCCCAATGCTGAGGATGGGGGATCAACAGCCATATTTGCACAGAAGACACCTGACCAGGTCGCTGCAGAATTAGCAgcgaaagaggaagagaagaagaggaaagaCAACATAAATAAAGATAAGAAGGGTGGGAAGGACCGCAAGGATCAGAAGAAAGACAAGAAGCGGAGAAGCAAACAGAAGAAAGGAGGAAAAGAAGAAGGAGAGgaggagaagggctgGAAAATGCCCCCGAGCAACTTCCTCCCTACTGTTGTGGAGGGAAACAAAATGTACAAAGGTGAGTTAGAGAGTAGGTATGAGGACCATAGTAATGTACAAAGGTGAGTTAGAGAGTAGGTATGAGGACCATAGTAATGTATAAAGGTGAGTTAGAGAGTAGGTATGAGGACCATAGTAATGTATAAAGGTGAGTTAGAGAGTAGGTATGAGGACCATAGTAATGTATAAAGGTGAGTTAGAGAGTAGGTATGAGGACTATAGTAATGTATAAAGGTGAGTTAGAGAGTAGGTATGAGGACTATAGTAATGTATAAAGGTGAATTAGAGAG
>TU653770
CCGGAGGCCCTTTGACGCAGACCTCAAGCCCTTCTGTAAAGTCTATAGGAAGATCATCCTCATCCCCAGACCTGACTATGCCTCCAGACTGGTGCTGTGGAGGGAGCTGCTGTGTGGCGGCGGTGCTCGCCTCACCCCCAACCTGGACCTGAGCTCCCTGGCCAAGGTGACAGATGGCTACACCCAGGGCCACATCCTGCAGGCTGTGAGGCAGGTGCTGACCCCTCGCAGGCTGGCCCAGCAGACTACCAGACCACTGACCGCTGAAGAGTTCATCCCTCCACTGGCCAGACAGGACCCCGTctacaaagaggaggaggaggcctttAAGATGTGGTACGGCAGGACACCTTTGGGTAAGAAGAGGGCACGGGCGGCCAAGGCCATCGAGGAGGAGGGAGAGTCGGGCAAGGACAAAGACAAGCGGGGCACTGGGAGGAAGACAGGGAAAGAAGAGAAAAGCAAGAAGAacaataagtaaatgtcaaagaCAAGAGACAGAAGTCGTCAACATTGGAGAGGTCTACAGACAGGGACTTTCAGGGGATGTGATTTACATTCCTACTTCTTAGATATGATGGACGATACATTTACTACCAGTCTATGACTGTAAATGTCATGACAACAGTATAACGGTAACAGTCGATCGTGTTATGATCATAATGACAAAAGTAGCTGTTTATCTTGTATGagaccagatataaa

Function

NR:

description
IQ and AAA domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982490.1 False 2921 mRNA 0.53 21 10173615 10233047
TU653759 False 232 TUCP 0.53 2 10179419 10179835
TU653760 False 446 lncRNA 0.54 3 10188146 10191010
TU653758 False 926 lncRNA 0.42 5 10190334 10197214
TU653770 True 705 lncRNA 0.52 3 10227810 10232985

Neighbor

gene id symbol gene type direction distance location
LOC110497049 LOC106575743 coding upstream 193185 9879599 ~ 9980430 (+)
LOC118965239 LOC106575823 coding upstream 297070 9783076 ~ 9876545 (+)
LOC110528748 acadl coding upstream 391986 9776039 ~ 9781629 (+)
LOC100135948 LOC100194643 coding upstream 403934 9763202 ~ 9769681 (+)
LOC110527090 LOC106575822 coding upstream 414631 9745341 ~ 9758984 (+)
LOC118965244 NA coding downstream 140871 10373918 ~ 10378145 (+)
LOC110527198 LOC106574751 coding downstream 147978 10381025 ~ 10410589 (+)
LOC110528725 LOC106574750 coding downstream 188137 10421184 ~ 10423568 (+)
LOC110527195 LOC106574795 coding downstream 194926 10427973 ~ 10462576 (+)
LOC110527193 LOC106574775 coding downstream 263510 10496557 ~ 10531876 (+)
G573369 NA non-coding upstream 19217 10134042 ~ 10154398 (+)
G573364 NA non-coding upstream 28105 10127034 ~ 10145510 (+)
G573363 NA non-coding upstream 47531 10125848 ~ 10126084 (+)
G572986 LOC106574782 non-coding upstream 107433 10065569 ~ 10066182 (+)
G572969 NA non-coding upstream 151438 10020340 ~ 10022177 (+)
G573424 NA non-coding downstream 24753 10257800 ~ 10258101 (+)
G573425 NA non-coding downstream 25534 10258581 ~ 10258828 (+)
G573426 NA non-coding downstream 26235 10259282 ~ 10259580 (+)
G573463 NA non-coding downstream 95499 10328546 ~ 10328927 (+)
G573464 NA non-coding downstream 99577 10332624 ~ 10332846 (+)
G573366 NA other upstream 41599 10128121 ~ 10132016 (+)
G572449 NA other upstream 1239737 8930109 ~ 8933878 (+)
G572476 NA other upstream 1250821 8922335 ~ 8922794 (+)
G572315 NA other upstream 1522717 8649980 ~ 8650898 (+)
G574038 NA other downstream 643060 10876107 ~ 10877184 (+)
G574122 NA other downstream 770457 11003504 ~ 11076001 (+)
G574194 NA other downstream 868498 11101545 ~ 11102286 (+)
G574244 NA other downstream 945749 11178796 ~ 11197247 (+)
G574284 NA other downstream 1017052 11250099 ~ 11250780 (+)
LOC110527289 LOC106590510 other upstream 8311 10173615 ~ 10233047 (+)

Expression


Co-expression Network