LOC110495474 (LOC106573985)


Basic Information

Item Value
gene id LOC110495474
gene name LOC106573985
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 11743954 ~ 11750311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570748.2
ACCAATCGTATCAAATGTTTAATTGACGTCATCACGAAGCGCCAGAGGATTCCGGAGACTTTCCCCACATGTGAAAAATGCATGAGGGCACTATTTAGATGTTTTTCTCTTTAGCAAGTATTTATTCTTCGGTCAGCACCAAGAAATAACAATCTTTAGCATTTTCTTTGATTGACTTAACATATTTTCTAAACCTGAATTCAACATTTGTCGCGTTAGCAAACTTTTCAGCTCTCAAGGTAGGCAGCTAATTTAAGTTAGCCACCTTGGTaccatctaacgttagctagctatcatgGATAACTCGGACGAAAATTCGGTACAATTCCACGGGGATGAAGAGATTATAGAAGTCATCGACCTTAACGAAACAGAGCAAAACCCAGATGATTTGGCGGATGAGTTCGAGGACGTGGACGTCGGAGAGACTGAGGACAGAGACAATGAACAGGAAGACTGGGATACCGACGACGAGATGGAGCAGGAAAAGGAGCAAGATGACAGCGAACTCACCTTTTCCAAACACACggGCTCCGTGTTCTGTGTGAGTCTGGACCCAGCCACAAACAGCTTGGCTGTGACCGGAGGAGAGGATGACAAGGCCTATGTCTGGAGAGTGAGTGACGgggaagtgctgtttgaatgtaCAGGCCATAAGGACTCCGTGACAAGTGTTTTATTCAGCCATGATTCTTCCCTGGTGGCCACGGGGGACATGAGCGGGCTGatcaaggtctggaaggtggagACCAAGCAGGAGGTGTGGTCCTTCGAGGTGGGAGACCTGGAGtggatGGAGTGGCACCCCTGCGCCCCGGTGCTGCTGGCGGGCATGGCGGACGGTAACGTTTGGATGTGGAAGATCCCAGGGGGTGACTGTAAGACCCTGCAGGGCCCTGGCTGCCAGTCGACCAGTGGAAAGGTCCTTCCAGACGGGAAGAGAGCTGTGGTGGGCTATGAAGATGGCAACGTACGACTTTGGGACCTCAAGCAGGGAAATGCCACCCATGTGATTAAAGGTCATGATGGACACCAGGGGGCGCTGACGTGCCTGGCCTGTAACAAGGATGGCTCTCTGGTGCTGACGGGCTCTGTGGACGGCCGTGCCAAGCTCATCAACACTGCCACTGGCAAGGTGTTGGGTGTGTTCTCTGTGGACGAGGGCAAAGCCAAAGCCTCTCAGGAGGATGCTGAGGAGACCAACTCGGTGGAGTCAGTGGGGTTCTGCAATGTGTTGCCTCTGATAGCGGTGGCGTATCTGCATGGGACCCTGGCTATCTATGACCTCTCCTCACAGGTCCTCAGACACAAGTGTCAGCACCAGGCTGGAATTGTTAAACTGCAGTGGGAGGAGTCATCCTCTGTGGTGTCCACCTGTAGTCTGGACGGGGCGGTGAGGCTGTGGGATGCCCGCTCGGGAACCATGGTGTCAGAGTACCGTGGCCACCAGGCGGAGATCCTTGACTTCACACTCAACagAGAAGCCTCTATGGCGGTCACTGCCTCTGGAGACCACCAGGCCAAAGTCTTCTGCCTCCAACGACCAGATCGTTAAtaagaggagcagagggagaaagggCGAGAGAAATGGGGATGGACTCAACCCCGATCGCGCTTTGTCGACAATGCACCTTAAAGGCAATATTCCCGTTTTTGTGGAGACCGTTTTAACAGTGGACACTGCATATATCGGCTCAATCCGAAGTTGTCGCTTAACCTTTTTGGGAAATGTGGGACGGtagccaacagccagtgaaagcgcagggcgccaaattcaaaacaacaaaaatctcataattaaaattcctcaagcatacacgtattttacaccattttaaagatacaattcttgttaatccagccacagtgtctgattttaaaaaggctttacagcgaaagcaccacaaactattatgttaggtcactaccaagtcacagaaaaacagcaatttttccagccaaagagaggagtcacaaaaagcacaaattgAGATAAATTGAATCACTAACCTTCAtggtcttcatcagatgacactcatgttacacaataaatgtatgttttgtttggtcaagttcatatttatataaaaaaaaaatctcattttacttTGGCGCGTTTACTTTggcgttcagtagttctaaaacatgcggtgacTTTGCAGAGAGcgacatcaatttacagaaatactcatcataaat
>TU655701
CGGAGACTTTCCCCACATGTGAAAAATGCATGAGGGCACTATTTAGATGTTTTTCTCTTTAGCAAGTATTTATTCTTCGGTCAGCACCAAGAAATAACAATCTTTAGCATTTTCTTTGATTGACTTAACATATTTTCTAAACCTGAATTCAACATTTGTCGCGTTAGCAAACTTTTCAGCTCTCAAGGTAGGCAGCTAATTTAAGTTAGCCACCTTGGTaccatctaacgttagctagctatcatgGATAACTCGGACGAAAATTCGGTACAATTCCACGGGGATGAAGAGATTATAGAAGTCATCGACCTTAACGAAACAGAGCAAAACCCAGATGATTTGGCGGATGAGTTCGAGGACGTGGACGTCGGAGAGACTGAGGACAGAGACAATGAACAGGAAGACTGGGATACCGACGACGAGATGGAGCAGGAAAAGGAGCAAGATGACAGCGAACTCACCTTTTCCAAACACACggGCTCCGTGTTCTGTGTGAGTCTGGACCCAGCCACAAACAGCTTGGCTGTGACCGGAGGAGAGGATGACAAGGCCTATGTCTGGAGAGTGAGTGACGgggaagtgctgtttgaatgtaCAGGCCATAAGGACTCCGTGACAAGTGTTTTATTCAGCCATGATTCTTCCCTGGTGGCCACGGGGGACATGAGCGGGCTGatcaaggtctggaaggtggagACCAAGCAGGAGGTGTGGTCCTTCGAGGTGGGAGACCTGGAGtggatGGAGTGGCACCCCTGCGCCCCGGTGCTGCTGGCGGGCATGGCGGACGGTAACGTTTGGATGTGGAAGATCCCAGGGGGTGACTGTAAGACCCTGCAGGGCC
>TU655704
CGTAACTGCTGGAGCTACGGTAGAGACCACGGACCACAGAGGACAGTGGGAATGAAAACAGTACTTCTGGGTTTACATGGTGGGACAGATGACGTGATGACATGATGACATGGGGAGATTGACATGCATTATTCACAAGAAAATGTTCTGTCGTGTTCAAGGGACCAACATGGTATGGGTTTTCGAGATGTGCTGTCCTGCTACTTATCAGTTGGTATATGCTGTCTAACTTGAATGTATCTAATGGGGTGTGTAGGTGTTGGGTGTGTTCTCTGTGGACGAGGGCAAAGCCAAAGCCTCTCAGGAGGATGCTGAGGAGACCAACTCGGTGGAGTCAGTGGGGTTCTGCAATGTGTTGCCTCTGATAGCGGTGGCGTATCTGCATGGGACCCTGGCTATCTATGACCTCTCCTCACAGGTCCTCAGACACAAGTGTCAGCACCAGGCTGGAATTGTTAAACTGCAGTGGGAGGAGTCATCCTCTGTGGTGTCCACCTGTAGTCTGGACGGGGCGGTGAGGCTGTGGGATGCCCGCTCGGGAACCATGGTGTCAGAGTACCGTGGCCACCAGGCGGAGATCCTTGACTTCACACTCAACagAGAAGCCTCTATGGCGGTCACTGCCTCTGGAGACCACCAGGCCAAAGTCTTCTGCCTCCAACGACCAGATCGTTAAtaagaggagcagagggagaaagggCGAGAGAAATGGGGATGGACTCAACCCCGATCGCGCTTTGTCGACAATGCACCTTAAAGGCAATATTCCCGTTTTTGTGGAGACCGTTTTAACAGTGGACACTGCATATATCGGCTCAATCCGAAGTTGTCGCTTAACCTTTTTGGGAAATGTGGGACGGtagccaacagccagtgaaagcgcagggcgccaaattcaaaacaacaaaaatctcataattaaaattcctcaagcatacacgtattttacaccattttaaagatacaattcttgttaatccagccacagtgtctgattttaaaaaggctttacagcgaaagcaccacaaactattatgttaggtcactaccaagtcacagaaaaacagcaatttttccagccaaagagaggagtcacaaaaagcacaaattgAGATAAATTGAATCACTAACCTTCAtggtcttcatcagatgacactcatgtta

Function

NR:

description
angio-associated migratory cell protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570748.2 False 2199 mRNA 0.49 11 11743954 11750311
TU655701 False 844 TUCP 0.50 5 11744006 11745659
TU655704 True 1164 TUCP 0.48 5 11748331 11750155

Neighbor

gene id symbol gene type direction distance location
LOC110528830 LOC106575616 coding upstream 115833 11536906 ~ 11628121 (+)
LOC118965246 LOC106574739 coding upstream 245087 11496553 ~ 11498867 (+)
LOC110495463 LOC106575569 coding upstream 313846 11016278 ~ 11430108 (+)
LOC110527184 LOC106575653 coding upstream 838245 10900155 ~ 10905709 (+)
LOC110527185 LOC106574771 coding upstream 849286 10805952 ~ 10894671 (+)
LOC110495473 LOC106575640 coding downstream 6420 11756731 ~ 11764384 (+)
LOC118965247 LOC106575639 coding downstream 24151 11774462 ~ 11776663 (+)
LOC110497002 il8r coding downstream 76191 11826502 ~ 11836170 (+)
LOC110528828 tns1 coding downstream 110857 11861168 ~ 12118392 (+)
LOC110528845 LOC100194500 coding downstream 429326 12179637 ~ 12187373 (+)
G575015 NA non-coding upstream 3139 11740554 ~ 11740815 (+)
G574853 NA non-coding upstream 14966 11728621 ~ 11728988 (+)
G574834 NA non-coding upstream 46323 11695277 ~ 11697631 (+)
G574812 NA non-coding upstream 67478 11652019 ~ 11676476 (+)
G574809 NA non-coding upstream 95485 11648195 ~ 11648469 (+)
G575034 NA non-coding downstream 15511 11765822 ~ 11766418 (+)
G575041 NA non-coding downstream 28973 11779284 ~ 11779817 (+)
G575028 NA non-coding downstream 39404 11789715 ~ 11790835 (+)
G575064 NA non-coding downstream 73474 11823785 ~ 11824098 (+)
G574754 NA other upstream 255450 11485253 ~ 11488504 (+)
G574348 NA other upstream 394101 11349349 ~ 11349853 (+)
G574284 NA other upstream 493174 11250099 ~ 11250780 (+)
G574244 NA other upstream 546707 11178796 ~ 11197247 (+)
LOC110528829 LOC106574706 other downstream 713941 12400616 ~ 12474139 (+)
G575758 NA other downstream 791706 12542017 ~ 12542481 (+)
G576160 NA other downstream 1422473 13172784 ~ 13173074 (+)
G576161 NA other downstream 1423001 13173312 ~ 13207489 (+)

Expression


Co-expression Network