LOC110528835 (LOC106575602)


Basic Information

Item Value
gene id LOC110528835
gene name LOC106575602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12259944 ~ 12275532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610974.2
GGGATTTCGCGACTCTTCTTTTGTCCTGCATGAATGTGTTTGGGGCCCCGACATTGATGCAGGGGTCACATGGTACTACAAAGCACCGAATGGGTTAAAAAAGAGGGGGTTGTAGTTTATGAAAGAGCGGCGGAGGAGAAAAAACAGTTATTGATAGTTTGGAGAGGCTACGAGGGGAATTAAGGCTGAAAACAAGAAGGACAGTTTCGAGCCTTAAAGAGCTGAGAGGGCCTCTGGCCAGGTGTCTGCTGAGGCCTCATCATGAGCTGGAGCTTCCTGACGCGTCTCCTGGATGAGATCTCCAACCACAGCACGTTCGTGGGGAAGATCTGGCTGACTGTGCTCATCATCTTCCGCATCGTGCTGACGGCCGTGGGGGGCGAGACCATCTACTATGATGAACAGGCTAAGTTCGTCTGCAACACGCAGCAGCCCGGCTGTGAGAACGTCTGCTACGACGCCTTCGCTCCTCTCTCACACGTCCGCTTCTGGATCTTCCAGGTGATCCTGATCACCACCCCTACCATCATGTACTTGGGCTTTGCCATGCACAAGATCGCCCGCATGGACGATGTTGAGTACCGACCTCTTCATCGCGCCGGGAAGAGGAGAATGCCCATCGTGACCCGGGGGACACAGCGGGATTACGAGGAGGCAGAGGACAACGGTGAGGAGGACCCCATGATCACTGAGGAGATCGAGGTGGAGAAGGACAAAGAGAAGGTGACAGAAGGCTCTGTGAAGAAGCACGACGGTCGGCGGCGGATCGCGCGTGACGGCCTGATGAAGGTGTACGTGTGTTCGCTGATCTCTCGCATCGCCTTCGAGGTGGCCTTCCTGTTAGGCCAGTATGTCCTCTACGGCTTCGAGGTGGCGCACTCCTACGTGTGCATGCGCTCACCCTGTCCACACATGGTGGACTGCTTCGTCTCGCGGCCCACCGAGAAGACCATCTTCCTCCTGGTCATGTACGTGGTTTCTCTCCTCTGCACCACACTCACCCTCCTGGAGATTCTCCATCTCGGTGTCGGCGGGGTCCGCGACACCCTTCGCATGCGCGCGAGACACCTCCCCACCCCACCTGTGGCCCGGGGGTCCCTCTGCAGTTCCCGCCATGTGCCCACGGCCCCGCCAGGGTATCACACGGCCCTGGGGAAGAAGGACCCGTCAGGCAAGCTGAAGGCAGAGTCCAGAGAGCCGTTGGTGGGGGACTCTGGGAGGCAGAGCCTGGGGGACGAGGCGTCCAGCAGAGACCTGGAGAGGCTGAGGAAGCACCTGAAGATGGCCCAGCAGCACCTGGACTTGGCCTACCAGAACGAGGAGGGCCAGGGGTCCCCGCCACGGAGCAGCAGTCCTGAGAACAACACCACGGCTGCAGAGCAGAACAGACTCAACTTGGCTCAGGAGAAACAGGCGGCGGCCAGGGAGAAAGGAGTACATGCCTGAATCCTGCTTAATGCCTGCTCGACTGCCTGCCTGCTTTCTCTTCCCAACTGGCCCTCCACAGATGGGGAAGCACATGGGAACACAGCCAGACAGCGGAGAGACTGAAGAGTGTGGTTGTGTGAGGGATGGAGGGCCTTGCAGTATTAAGGGCCAGGGACAACGTGAATGTAAAGCTGCTACAGTACAAATCTCCTTAGCGTCCGACTCGTTCCACTTGAGTGCCTCCAAATACTTTGGTCTCAAGTTTCAGCTTGCCGAAACCGCACACCCTACTTTGGCAGTGCCTGTCGCTGAAGCACAGCCTTCTAGATGTAGTCGACACCCCGTTTATTTTTGCCCAAAGGTGTTTTGGTTTGTCTGTTTTTGTTTGAATTAGTTTGGCAGTCATTCTGTTCTCCGGTCAGTTTCTGTAGTCTGTCAGGTGACTGACTGGGTCTCAGCCAGTTCCTCTCTACTGACAAAGTTTACTAGTTGGTCCACCTTTAAGAGCGAGGCTCAACAAAGTCTTAAAAGCATTTACTGCACATGTTGTTATGCCAGGGCTTGTTGTTGCTGGATAGAGTGAACTGCAATGATCACTTGCCTGCAGGGGATGTCCTTTTGCACAGTCATTAAGAGGATGTTCGTATGTTCGTGTGGGTGTGTTGTGTACAAGGTGGTGGGAGGTTTTCTGAAAGTGCAGTTCTTTAACGAGCACTTAACTTAATCTTGGACGAAAACTGTACAGCTTTTGTCTGCGTTTTTAGTCATTAAAAATGAATTATTTTGACATTCCATGAGACTCCACTCATTGTTAAAGCCTTGTATATTAGTCATTCCAACAAATTGGCCAAATGTGATAAATACCTGGGAAATGCTTGAATCCTGTGATGACTATAAATGTTCTTCCATGCTGTACCTGTCATTTTGCTCCTGTCCTGGTTCCTTTTGTTCATGCTAGTCGGTGTTAAACATTTTTATGTTCGTACTGGATTTCTAAGGAGGCAAATGCACCAACATTTGCTTATGTTGTCATAATGTGATGGTTCTTCGAAATGGTTGGGTTGGAAACTGGAAACGATCGTGTCGTGTGCTGTGTTCATTTCATTTTTCGTTTTTTGTTTTTATTCGGTACAAAAATAACATTCCAATATTTTTCTATTTGGAGTGTTTTTGTTAAATTGTTCCAAGTTGTTTTTTGCAACTGTAGAGTTTAATTTCATAGAAATACATGAATAAATATATTTGAACAGAA

Function

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610974.2 True 2680 mRNA 0.51 5 12259944 12275532

Neighbor

gene id symbol gene type direction distance location
LOC110528831 LOC106574695 coding upstream 3831 12213138 ~ 12256113 (+)
LOC110528845 LOC100194500 coding upstream 72571 12179637 ~ 12187373 (+)
LOC110528828 tns1 coding upstream 141552 11861168 ~ 12118392 (+)
LOC110497002 il8r coding upstream 423774 11826502 ~ 11836170 (+)
LOC118965247 LOC106575639 coding upstream 483281 11774462 ~ 11776663 (+)
LOC110528723 LOC106592612 coding downstream 12056 12287588 ~ 12352864 (+)
LOC110528846 LOC106574744 coding downstream 78316 12353848 ~ 12364044 (+)
LOC110528829 LOC106574706 coding downstream 125084 12400616 ~ 12474139 (+)
LOC110528838 LOC106575524 coding downstream 212369 12487901 ~ 12520663 (+)
LOC110527307 LOC106575529 coding downstream 273669 12549201 ~ 12556506 (+)
G575489 NA non-coding upstream 1999 12257492 ~ 12257945 (+)
G575268 NA non-coding upstream 46947 12212732 ~ 12212997 (+)
G575276 NA non-coding upstream 54139 12205593 ~ 12205805 (+)
G575275 NA non-coding upstream 54414 12205331 ~ 12205530 (+)
G575533 NA non-coding downstream 30504 12306036 ~ 12311314 (+)
G575557 NA non-coding downstream 104391 12379923 ~ 12382780 (+)
G575564 NA non-coding downstream 120152 12395684 ~ 12395911 (+)
G575565 NA non-coding downstream 121138 12396670 ~ 12396884 (+)
G575568 NA non-coding downstream 124168 12399700 ~ 12453059 (+)
LOC110495474 LOC106573985 other upstream 509789 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 762028 11496553 ~ 11498867 (+)
G574754 NA other upstream 771440 11485253 ~ 11488504 (+)
G574348 NA other upstream 910091 11349349 ~ 11349853 (+)
G575758 NA other downstream 266485 12542017 ~ 12542481 (+)
G576160 NA other downstream 897252 13172784 ~ 13173074 (+)
G576161 NA other downstream 897780 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 1210984 13486516 ~ 13489737 (+)

Expression


Co-expression Network