LOC110527307 (LOC106575529)


Basic Information

Item Value
gene id LOC110527307
gene name LOC106575529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12549201 ~ 12556506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608495.2
CAAGTGGAGGCGGTGCGCTGGCGAGGTGAGTTATACCTACTGCGTTCATTCTATGTTCGGTCACTCTCCACTCGATACTGATTCGTTTGTTGGTTTGCATTTAACTTTACGTCGATGGAGCAACCGTATAGCCCTGACTGGACCATACTCTCATTCTGAAAACAAGTCGGGAGAAAAAGACAGGaTTCCTTGCCTTCAGAGGACTGAGTGATAGGCTGTCCTGAAACTTGTGCTACAGTATGTCTGGATCGAAATGATATGCCCACTCTTTTCCTCTTCTGTCTAGTTGGAACCCATCTTTTGTATTCCTCCGGACTGTCTTTGGTCAAACTCTACAGTCACTTCACTGGACTCTAATGGATGGATATGGGGATGAAGATAGAGGGTTATTAATCTGGTACAGGATCAAATGATATGTATATGAGTAGCTGCTGTGTACCATCAATAGTCATTGAAACCTGCTCTGGAACCGCAGGGATAGTCAGGTATTTTACCGGCTGAGCTAATGGGGCCTCCTCAGCCACGTTGGCAAGTCCTGTTCCCTTCTTCTTTCTGTGTCTCCACTTCCCCCGTGAGGACGTTATGTCTCGTGGTGGCCCTCATGGTTGTCATGGCGACACCGTGCCCCAAGAGCTGTCACTGCTCGGAGAGGAATGGCGTGGTGGTGCAGTGCGTCTCCCGGAGCCTTGACCAGATCCCTCCGGACCTACCGGAAGACACCGTCACCCTCCTGCTCTCGTCCAACCGGATCAGCCACATCCCCAACCAGGCCTTCAAGGACCTCCGCCGCCTCAAGGAGCTGGACCTGTCGCATAACCACATCGAGAGTATCGACGCAGGGGCCTTCCTGGGGGTCTCCGAGGGACTCCGCTCCCTGGACCTCTCCAACAACCAGCTCCGCAGCGTCCCCAAGGAGGCCTTCACCAAGCTGAGTGCCCGTATAAGACTCTCCAACAACCCCTGGCACTGCGAGTGTTCCCTCCAGGAGGTACTGAGGGAGCTGAGGCTGGACCCTGAGACGGTCAACGAGGTGAGCTGCCACACCTCTGTCCAGGACGAGTACGCCGGCCGGCCCGTCATTCAGGTCCTGGACTCTGGCATCAACTTCTGTAACTTCCACCACAAGACCACCGACGTGGCCATGTTCGTGACCATGTTCTGCTGGTTCGCCATGGTGATCGCCTACGTCATCTACTACGTCAGGCACAACCAGGAGGACGCGAGGAGACACATGGAGTACCTCAAGTCTCTACCCAGATCCTCCCAGATCAGCAAGGACTTTGACACAGCCAGCACTGTGCTCTAGCAGTGCTCTATGTGTGGTGGCAGTGACAGCGGTGGGGGTTCTTACATGTCCATGGGATAGTAAACACAGTGGCAAACTTGCAAGGTGTATGTACAGTAACTATTTTGAATGTGAAGACGGGCCTCTGGACGAGCCACTGGACTGCACCTACCCGTCTGCACGTGCCTGACCGGCTCGCAGTGGGCCTCGGGTTCGTCAGTGCAATCAACCTTTTTGTGTCGACTGTTTATGAAGTCATGGGGTCAATACCTTTtgagatttattttttattgggaAGAAACATGACCTCTACTTCTCATCGTCATATGTTTTCCCAACAGTAGGATTTAATGAGAAATATATTGTATAAGTCTCTGAGAGTGTCTCCATATTGATTTGGTTGTTGTGATTGGTTGTAGTGCTATACAGTACTATTGATCTAGTCATTGTGATTGGCTGTTACACTGGACTGAATGTTCATCTTGTGTCTTCAAGTGCCTAGAAACAGTAAACAGTACCTCAACCAAGGCACTGTGAAAGCAAATGTTGAACTACAAAATCcctttaaagctagaatccttatccactgggcacagatgtcatttcaatgtctagttttgatctaattttggttgagttgtcagctAACGTCAATTcgatgtgaaatcaacaaaacatttcaccatgtcgTTGGGTTTGGGTTAAAAGTTGGGGGAAAATACGACcttcccttacgttgatgacttttttcaaatctaaTCATTTtcccacattgattcaacatcatcacatagatttttgaTTTTAAAGGAcggtggaaacaacgttgattcaatctatttttgcccagtgggagtTGTTAGATCCATTTTttgacttataaatgaatgatacatacccattgattcttaaggaatataatgtataaatgcctcgtgagcttagttcaactgtcgtacccaatCAGAACCCCAGATATGTGCTTTTTTTGCTTCAATGTTTgcaaacaaggtaaatgtaaacaaatactGTCTGGCtttaaaacatggttaaaacggTAATTTGTTTGATATGTCCATAGCTATGTCTATGAATTTgacagtggttacatttctccaggcttTTCACTAAACAGAGGGGcaccactttgttattgttttagcTGAAGATTCTAGCTTTAATATGTCATGTTAAATATTTTAGATGTTGTGAAGGGTGTTATGAATCATTTACCATTACTCATTTTGGCAATCAATGTGATGCCACTTTCAGGACATAAATCTTTAAATACTCATATCGGATTTAGTTCCCAAACTGTCAAACACCCTTCTACAGACTTTGATCGATGCTGATGTTGCGTCAGAAAGTCTATGATGACCAACAGTTGGAAGTAGTCTATACTTCCTCAGTAGTGTATGTGTTCTGTATTGTTTTGTCTCTATTGGTTTGTATGTTTTGTCCCTTTAATGGTATGGGATGTAGTTTATGTTTAGGAGAGAGGAACTGATGAAAGGAAAGTGAGAAAAGGAGACGTTCTAATGTTTTATTGAGACTTGTGTTGAAACGGAGAAACGTTGACCATGAAATCTGTCTTTGTCTGTCGTTTAGCCCCAGGGATATGTCTTGATCTTGTTGCGCTCGTCTCTCTTTCTAATTATTCTTAGCAAAATGGTTGTGAATCAACCGTTGTCGTTTTTATATCTGAAATAAAACGGTCTCTAACTA
>XM_036982610.1
AAAGTACATTCCTATTACTTTTTAGACTACAGAAATCATCAATTGAGTTGGATGGGGAATTAAGCTCGCAAGTTAACGATGTCATTGTCCTGTGCGTGTAACAATAACACCTGAACTTGAAATAAATGATACTACCTCCGgttcttcatcatcatcaccaccaccaccttaatgatGACCATTAGACTATATTAACAGTGACACTAATAAAACAGACCCTCTACCATGCATGGGACGATCCATAAAGAAAAATAAGAACGTACTTTCTCCACCTGAATGACCTCTTGCATTCTGAAAAaTTCCTTGCCTTCAGAGGACTGAGTGATAGGCTGTCCTGAAACTTGTGCTACAGTATGTCTGGATCGAAATGATATGCCCACTCTTTTCCTCTTCTGTCTAGTTGGAACCCATCTTTTGTATTCCTCCGGACTGTCTTTGGTCAAACTCTACAGTCACTTCACTGGACTCTAATGGATGGATATGGGGATGAAGATAGAGGGTTATTAATCTGGTACAGGATCAAATGATATGTATATGAGTAGCTGCTGTGTACCATCAATAGTCATTGAAACCTGCTCTGGAACCGCAGGGATAGTCAGGTATTTTACCGGCTGAGCTAATGGGGCCTCCTCAGCCACGTTGGCAAGTCCTGTTCCCTTCTTCTTTCTGTGTCTCCACTTCCCCCGTGAGGACGTTATGTCTCGTGGTGGCCCTCATGGTTGTCATGGCGACACCGTGCCCCAAGAGCTGTCACTGCTCGGAGAGGAATGGCGTGGTGGTGCAGTGCGTCTCCCGGAGCCTTGACCAGATCCCTCCGGACCTACCGGAAGACACCGTCACCCTCCTGCTCTCGTCCAACCGGATCAGCCACATCCCCAACCAGGCCTTCAAGGACCTCCGCCGCCTCAAGGAGCTGGACCTGTCGCATAACCACATCGAGAGTATCGACGCAGGGGCCTTCCTGGGGGTCTCCGAGGGACTCCGCTCCCTGGACCTCTCCAACAACCAGCTCCGCAGCGTCCCCAAGGAGGCCTTCACCAAGCTGAGTGCCCGTATAAGACTCTCCAACAACCCCTGGCACTGCGAGTGTTCCCTCCAGGAGGTACTGAGGGAGCTGAGGCTGGACCCTGAGACGGTCAACGAGGTGAGCTGCCACACCTCTGTCCAGGACGAGTACGCCGGCCGGCCCGTCATTCAGGTCCTGGACTCTGGCATCAACTTCTGTAACTTCCACCACAAGACCACCGACGTGGCCATGTTCGTGACCATGTTCTGCTGGTTCGCCATGGTGATCGCCTACGTCATCTACTACGTCAGGCACAACCAGGAGGACGCGAGGAGACACATGGAGTACCTCAAGTCTCTACCCAGATCCTCCCAGATCAGCAAGGACTTTGACACAGCCAGCACTGTGCTCTAGCAGTGCTCTATGTGTGGTGGCAGTGACAGCGGTGGGGGTTCTTACATGTCCATGGGATAGTAAACACAGTGGCAAACTTGCAAGGTGTATGTACAGTAACTATTTTGAATGTGAAGACGGGCCTCTGGACGAGCCACTGGACTGCACCTACCCGTCTGCACGTGCCTGACCGGCTCGCAGTGGGCCTCGGGTTCGTCAGTGCAATCAACCTTTTTGTGTCGACTGTTTATGAAGTCATGGGGTCAATACCTTTtgagatttattttttattgggaAGAAACATGACCTCTACTTCTCATCGTCATATGTTTTCCCAACAGTAGGATTTAATGAGAAATATATTGTATAAGTCTCTGAGAGTGTCTCCATATTGATTTGGTTGTTGTGATTGGTTGTAGTGCTATACAGTACTATTGATCTAGTCATTGTGATTGGCTGTTACACTGGACTGAATGTTCATCTTGTGTCTTCAAGTGCCTAGAAACAGTAAACAGTACCTCAACCAAGGCACTGTGAAAGCAAATGTTGAACTACAAAATCcctttaaagctagaatccttatccactgggcacagatgtcatttcaatgtctagttttgatctaattttggttgagttgtcagctAACGTCAATTcgatgtgaaatcaacaaaacatttcaccatgtcgTTGGGTTTGGGTTAAAAGTTGGGGGAAAATACGACcttcccttacgttgatgacttttttcaaatctaaTCATTTtcccacattgattcaacatcatcacatagatttttgaTTTTAAAGGAcggtggaaacaacgttgattcaatctatttttgcccagtgggagtTGTTAGATCCATTTTttgacttataaatgaatgatacatacccattgattcttaaggaatataatgtataaatgcctcgtgagcttagttcaactgtcgtacccaatCAGAACCCCAGATATGTGCTTTTTTTGCTTCAATGTTTgcaaacaaggtaaatgtaaacaaatactGTCTGGCtttaaaacatggttaaaacggTAATTTGTTTGATATGTCCATAGCTATGTCTATGAATTTgacagtggttacatttctccaggcttTTCACTAAACAGAGGGGcaccactttgttattgttttagcTGAAGATTCTAGCTTTAATATGTCATGTTAAATATTTTAGATGTTGTGAAGGGTGTTATGAATCATTTACCATTACTCATTTTGGCAATCAATGTGATGCCACTTTCAGGACATAAATCTTTAAATACTCATATCGGATTTAGTTCCCAAACTGTCAAACACCCTTCTACAGACTTTGATCGATGCTGATGTTGCGTCAGAAAGTCTATGATGACCAACAGTTGGAAGTAGTCTATACTTCCTCAGTAGTGTATGTGTTCTGTATTGTTTTGTCTCTATTGGTTTGTATGTTTTGTCCCTTTAATGGTATGGGATGTAGTTTATGTTTAGGAGAGAGGAACTGATGAAAGGAAAGTGAGAAAAGGAGACGTTCTAATGTTTTATTGAGACTTGTGTTGAAACGGAGAAACGTTGACCATGAAATCTGTCTTTGTCTGTCGTTTAGCCCCAGGGATATGTCTTGATCTTGTTGCGCTCGTCTCTCTTTCTAATTATTCTTAGCAAAATGGTTGTGAATCAACCGTTGTCGTTTTTATATCTGAAATAAAACGGTCTCTAACTA

Function

NR:

description
leucine-rich repeat-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608495.2 False 3010 mRNA 0.45 2 12549201 12556506
XM_036982610.1 True 3124 mRNA 0.44 2 12549500 12556506

Neighbor

gene id symbol gene type direction distance location
LOC110528838 LOC106575524 coding upstream 28538 12487901 ~ 12520663 (+)
LOC110528829 LOC106574706 coding upstream 75062 12400616 ~ 12474139 (+)
LOC110528846 LOC106574744 coding upstream 185157 12353848 ~ 12364044 (+)
LOC110528723 LOC106592612 coding upstream 196337 12287588 ~ 12352864 (+)
LOC110528835 LOC106575602 coding upstream 273669 12259944 ~ 12275532 (+)
LOC110527093 NA coding downstream 11670 12568176 ~ 12568569 (+)
LOC110527308 fam171b coding downstream 29050 12585556 ~ 12594004 (+)
LOC110527311 LOC106575461 coding downstream 64357 12620863 ~ 12693768 (+)
LOC110527313 LOC106575531 coding downstream 208303 12764809 ~ 12767812 (+)
LOC110527314 LOC106599837 coding downstream 211844 12768350 ~ 12774730 (+)
G575752 NA non-coding upstream 22671 12526228 ~ 12526530 (+)
G575619 LOC106574707 non-coding upstream 64537 12483954 ~ 12484664 (+)
G575618 LOC106574707 non-coding upstream 67869 12480344 ~ 12481332 (+)
G575617 NA non-coding upstream 68937 12479996 ~ 12480264 (+)
G575616 NA non-coding upstream 69289 12479207 ~ 12479912 (+)
G575804 LOC106575526 non-coding downstream 38672 12595178 ~ 12595925 (+)
G575805 NA non-coding downstream 39476 12595982 ~ 12596239 (+)
G575808 NA non-coding downstream 41765 12598271 ~ 12598499 (+)
G575809 LOC106574666 non-coding downstream 43963 12600469 ~ 12601529 (+)
G575811 NA non-coding downstream 46446 12602952 ~ 12603241 (+)
G575758 NA other upstream 6720 12542017 ~ 12542481 (+)
LOC110497002 il8r other upstream 713886 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 799046 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1051285 11496553 ~ 11498867 (+)
G576160 NA other downstream 616278 13172784 ~ 13173074 (+)
G576161 NA other downstream 616806 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 930010 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1558830 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1589564 14146070 ~ 14159585 (+)

Expression


Co-expression Network