LOC110527308 (fam171b)


Basic Information

Item Value
gene id LOC110527308
gene name fam171b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12585556 ~ 12594004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608496.2
TCTCTGTTGTTGTACGCCCCGAAAACACAGCATCAGCACCAGCGCGTCAACACCACCAGCCTGCCTGCTTTCTGTGCATACTTAGGTTACCTGCCTCCGTTCCACCATGAGGTTTCCATGACAAAGAAAGCGGCGAGACTAGGCCTCCattcctccttctctgtctcatTTCGCGCAGTTATGTCTTTGGTTCGCGGCTCCCTCTCGCCATGCCTGCGGACCGCCTGTACCTGCTTTTCTCGCTGGTTGTGATCTCCTGCGGGGATGGTGTCGTGAGGGCGGCGCCGGAGGGTGGTGTCCTCGGCGGCCTAATCACGCTGCTGGCCGCCGAGGACAATGCCATCGCCACTGTCCCAAACGGATCCATCAACGGCCAGACGGCCCTTTCTCAGGTTCAGACTCCGTCTGCCCTAACACCAGAGCCGCCCTTTGCCCTGAGGGTCCTGGTGAAGGATCAGGTGACCCGGCGGCGCCTGGGCGGGGCCCATGTGGGGGTGTTTGTCAACCACACCCTGAGTAGCCAGGCCCTGactggggagaagggagaggtgcTGCTCAGGGTCCCCTACAGCCTGGGACTCAGCCTCACCATTGTAGCTAGCATGGAGGGATACGTCCTCACCCTGTTGCCCTGGAGGACCACCAAGAGACCTATATTCTCCTCAGTGACCTTATCGCTGCTCCCTCAAAACCAAGGCAACATCTGGCTGTTTGACGACTCCGTGCTCATCACTGGGAAGTTACCTGACATCTCCTACCAGCCCAGCGTTCAGTTCCCCAAGAGTCACCTGATGCTCTCTGACGGCAGTAACACCTCCACAGTGATGGCCTACCTGACCGTGCCACAGCGCCACCTAGGCAAGGACTGTGTCAACTGCACCCCAGGCATCATTCACAACAAGTCAGTGTTCAGGAGTGTTGAGTTGCGGGCGATGGCAGCGGTCAGCACTCTGCTGTACTCTGGTGGTCAGGAGGTCCAGGTGAAAGGCCCCATCCAGATCTCCCTGCCCCTGGCACACACCACCAACCTGAGGCCCTCGGACACCCTCCCTGCCTGGGACTTCAACACCAAGACAGGTGCTTGGGAGAACCAGGGTCTGGGGATAGTGAAGATGGTTGGAGATCATCTGGTCTGGACCTACATTGCTTCTCACCTGGGTTACTGGATCGCTGCACCCCTACCCTCCTCCAACGGTTATATGGGCCATGCCAGCTCAATGGAATTCCTCTCCTACCACACCTACCTGCTCGTAGGAATACTGGGTGGGACTCTGGTTATAGTCTTGGGGTTTCTGGCTGTGCTGCTGTGTCAATGTGGAGGTTCAGGTTCCTCTCGTGGGCCGAGGAGGAGAGCACGGTTCTCGAAGCGGTCCGCTCTGAAGAAGGACCAGACCACCTCCACCCACATGGAGGAGGGCCATGCCATGATGTCCTTCCACCCCGGAGACAGAGCCCATGGCCTGGCCTCGCGCAGCGTCCAGTGTGACCCCTCCACCCCCAGGCACAACAAAGCCAACTACAACATCTATGTGGAAGACCCCGGGCGTGGGTCTGCCCTCCTGTATGAAAATGTGGGGAGCGTTGCCAAGGGACCCCCGATATCACACCACTACATCAACAGTGAGGAGGTAGCCAGGCTGAGGGAGAGGTCCAGCGAGGAGCAGAACAGAGCCCACCTGGGTGGAGGTGCTCAGATGCTCCACCTTTACAACCAGCCTGTGGCCATCCTCCAGGCCCCGGAGCGCTTCAGCTGCCAGGGTGGGGAGCAGCAAGGATCAGGCTGCAAGTCGGCCACCTTCCCCCGTAACGGAGGAGCCTATGACACCCACTCCCACTCTGAGCAGGGCGGTCATGACAGCTACACCCAGACCCTCCCTAAGAACCCCCACCTTGCCCAGGGAGCCAACCCCCAGCAGGGCGGCCAGGACCAGCCCCAGGCCCTGGAGACCACTCCCCAAGGCCCAGCCTCTAATCCTGGGGCGTGGGGCCGTTACAGCAGCCTCCCGGAGTCCTCCGTTTCCGTCCCTGGTACTCTGAACGAGGCGGCTGGAATGAGGGCCTTCAGCAGTGGGATGGGGGGCCCCAGTGAACTCCAGGGGATATCAGAGCGTACACTCCTGGAGCTGACCCGAGGCAAGGCCTCGTCGCCTCACCCCAGGGCCTGGTTCGTCTCCCTGGATGGGAAACCAGCCGCCTCGGTCCGCCACTCCATCATAGAGCTCCAGGGACGCCACCCACGGCCCCCCAGCAGCAACGACACCAGCCTGGACTCTGGCGTGGACATGAATGAGCCCCAGCATAGTGTGAGGGAGGCGGAGCGAGAGAGGCCTTCCATCCGGGGCTCGTTCCCCCATCACAGCAGAGGGCGCTACAGCGAGGAGCAGGACCTGAGCAGCAGTGAGAGCGGCACCACCGCCACCTGCACCCCTGAAGACCCCTACCTGAGGAACATTCTGGACGGGAGCAGCGGGGCCATTCCCAATATCCCGGAGGAGCGGGACGGAATGGACACGTCCAGTGCACAGGAGGACAGTGAGTCGAGGGGGACACCGCCCCCACGCAGgctgaggaaggtgagggagaaggggagggccGAGAAGAGAAGCGCCAGACACCATGTCAGAGAAGAGAGGCCTCTGGTCAAACGGAGCTAAGGCACTGCTCACCAGAGATGGACTGGGATGGGACTTATTTCATTACCAGTCAATTCTGGAAGTGTATTGACATTATTGGCATTCAGTAGTTAATGGGCATGTTTCATGTCCAGTTGCATGGTCAGTGCTTTTTCCTGAATTGGCTGTGATGGTTACAGAAAGGTTGAATCTGTCAAGAAGGGATTGAGTTTATTGTTGATTGTTTTCCTAAAGGGGTCGTATGTTGACGGACGGCTGAGACAACGGACGGTGATGTTAAAGCGTTTTCTGTGGTTTGATGGATGCGTATGCTCCAGTCCTTCTAAAAGGAATAGTTAGATAGATGCTAGTGGACACAGCAGTAGTATGGCTTCAGATCGTCTCATTCCTGGCATCTGCGTCAAAGAAGATGTGTTCTTTACACTGCCTGCGATGAGGAGTTAGAGATACTGTATAGCGAGATAATGAAGGGTAATTAGGATAGAGGGCTGTATTGGGCTGAGCCGATGAGATCTGGCAGCAGAGACGGACAGTGATACAGTCCTCCTGTACAGTACACCCACCGTGATTGCCTGCCTTTACAGGAAATCGATATTAACACCATTGCCTGCTCTGCTCACAGCGTTTAAGACTGGCTGTACCCAGCCATCTGTCTATCGCTCTGTTTATAAACTAGACACTGATTCGCAGCTGTCCCTTTTAGAGGTCATCTTTACACCTCTATTAAGGGGGAAATACCATTATTTCTTTGAGAATGCATGAAAGGTATAAAGTAAAATGTTGTGTATGAAAAGAGGAAAGTATGTGTATTTGACGTGTAGTGTGAAGACAATGGAAATGATGTCTCTTCTTAGGGACATTAAGTCTGAGGGATACTAATCCAGTCATGTGTTACTTTAACATATTCTTCTTCAAATAGTTACTGTTGATGTTCAATGATTCCTGTTCCACGAGCAGATCTTACACAACACATCGCTGTCCTTACATACAGATGGAGTATGGGGAGGTGGTCAGTTTAAACTTTCATTGTTCAGTCTAAAAAGCACAGAACACTTTCATTTGCCTGTTTGTGATGCATTGGAGCACAATTGGGAACGATACACATAATATAATTTGATTGGTTAGAACCCACTGCAATGAGAACGTAATAAGCGTAACATAAAACACTCAAATAaaggttttatttttatttttatttttttaagtgagGTGGTATTTCAAATGAACACAAACTATATTGCTGTGATGGACTGATACATTTGGTGAAGCACACAATCTCCTCCTGAAAATGATCTGACCAGCGATATCAGTCGTCCTGCTGCTAAATTTGAAACAACATTCATATTTTGCCCATATTTAGTCTTCCTCGTGGTGTGACATCACACACGCCAGTCCTTCAGTGTGTATGAGGATAAATACTGTACATGAATAGCTTTATTTGGTATGTACATACTCAAGCATATGATCTAGTATGTATGCATACATCGTCCTATCCTTCTCAGCAACTGCGACGAAAAATGTTCCGAGAGAATGAGAATGCTTCTCAGAGTGAAGAAGAAAGATATGCTTTTTTGAGCCATCATCGCTATTCATAAACCCAAGCTTTAGTGTATGTGCTTTCCTTCGGAGGTTTGTTACATTATTGTATGTTAGCTTTGGTGCGATGAATAGGTTCAAATGTGATCCGGGGTGTAAAAAGCTTGACGACGTAGCAACTTGTACCTTCTAAATGTAGCACCGCAAGTTATACACCTGACGAATGCGGCGATGATTTATGAAGCTTAAAATGATTGAATGctgaacatgttgttgttgttgttgtcgccaCTGATGAAGGTTATGAAAAACAAGATGTTTCAACCGTTGGAGAATTGTATAAAGTATAGTATGTAATAATATTTCTCAGAGACAAAACAGACCCCACTGGCCCATCCTTTTCAAAGTGGCCTTCACTGAATGTATTTCCTTGTATTTATTTCATTGTAATGTAGTGTATTTCTACTGTCCGTATTCATTTAACATTAACTGGCATTCAGGCTTTTGAAACGGGCATTTCTTGTGTTGATTACGTCAGTATATTACAGTAGTGTGATTAGTCTGCCTTTTTGTGCACTTATCAATGCCTAAGTAATAAACTCACTTGATACCAA

Function

symbol description
fam171b Predicted to be integral component of membrane.

NR:

description
protein FAM171B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608496.2 True 4783 mRNA 0.51 8 12585556 12594004

Neighbor

gene id symbol gene type direction distance location
LOC110527093 NA coding upstream 16987 12568176 ~ 12568569 (+)
LOC110527307 LOC106575529 coding upstream 29050 12549201 ~ 12556506 (+)
LOC110528838 LOC106575524 coding upstream 64893 12487901 ~ 12520663 (+)
LOC110528829 LOC106574706 coding upstream 111417 12400616 ~ 12474139 (+)
LOC110528846 LOC106574744 coding upstream 221512 12353848 ~ 12364044 (+)
LOC110527311 LOC106575461 coding downstream 26859 12620863 ~ 12693768 (+)
LOC110527313 LOC106575531 coding downstream 170805 12764809 ~ 12767812 (+)
LOC110527314 LOC106599837 coding downstream 174346 12768350 ~ 12774730 (+)
LOC110527315 LOC106574719 coding downstream 187379 12781383 ~ 12794388 (+)
LOC110527316 LOC106575583 coding downstream 214472 12808476 ~ 12814546 (+)
G575767 NA non-coding upstream 33131 12550823 ~ 12552425 (+)
G575752 NA non-coding upstream 59026 12526228 ~ 12526530 (+)
G575619 LOC106574707 non-coding upstream 100892 12483954 ~ 12484664 (+)
G575618 LOC106574707 non-coding upstream 104224 12480344 ~ 12481332 (+)
G575617 NA non-coding upstream 105292 12479996 ~ 12480264 (+)
G575804 LOC106575526 non-coding downstream 1174 12595178 ~ 12595925 (+)
G575805 NA non-coding downstream 1978 12595982 ~ 12596239 (+)
G575808 NA non-coding downstream 4267 12598271 ~ 12598499 (+)
G575809 LOC106574666 non-coding downstream 6465 12600469 ~ 12601529 (+)
G575811 NA non-coding downstream 8948 12602952 ~ 12603241 (+)
G575758 NA other upstream 43075 12542017 ~ 12542481 (+)
LOC110497002 il8r other upstream 750241 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 835401 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1087640 11496553 ~ 11498867 (+)
G576160 NA other downstream 578780 13172784 ~ 13173074 (+)
G576161 NA other downstream 579308 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 892512 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1521332 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1552066 14146070 ~ 14159585 (+)

Expression


Co-expression Network