LOC110527310 (LOC106574666)


Basic Information

Item Value
gene id LOC110527310
gene name LOC106574666
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12600012 ~ 12602688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608498.2
ATGGAGGCTACGTCACGTCAACGTGCTGAGCGTCACTTCTGATAAGCCAAGGAAAGGCTCCCGAGGAAAAACTGTTACATTATAGCAGATTTTTGCTATTTCATCAAATTATTCCGCAAAATGTAAACGAACAGCAATCAGGCATAGTCTATCTAGTCACGGAAATATGGAATGTGTGTTTCATTGGCTTTTTGAGAATTGATAGTGAGCTCCAGTCAATGGAAGCCGTGATGGAGGTTAAGGAGTCAGAGACAGCCATGGCGGGTTTTGAGGATTCAACGGAAGCCACAATAGACGTTAAGGAGTCAATTTCAGCCGCAATGGATGTGAAGGAGTCCATGTCAGCCATGATGGAAGTTAATGAGTCAGAGTCAAAAGAAGCCGTTGTGGACATTAAGGAGTCACAGGGAGCTGTTATGGAACTCAAGAGGCAGTCTTCCTCCTCTGGCGGCCAGGGGCGGGACAGAGACCGGGAGTCGGACAGCTATCTCCAGCACCTCCAGTGTCCCCACTGTCTGCTCCAGTGTAAGAGCCACTGCAGCTACCTCATCCACATCGCTAAGATCCATCCAAGCCGCCTGGATGACACGCCTGTGGGTCGCCTGGGCAACGCCATCTTCTACCAGCGCACGGCACGGCTGTTCCACTGCAGCTTGTGTTTCCACACGGCCAGGGAGTTCCCTCGCCTCTACGACCACCTGCTCACCTGCCACTGCCTCTCTGGGAAGGGCCAGGgtgaggagggagaaggggatgagcgtaggggggaggggggagaagaacAGGAAGGTATCAGTGTAGATGTGCTGTCAAAAGACAGTAGTTATCCTCTCAGTGAGCCCAAggcagaagaggaggatgaggacaaAGGAGGAGCGAAGAAAGAGGAAGGTAGGAaaagaggactagaggagatggaggaaggcGAGGATAACGAAGAGGACTCCCGCTCAGCCGGCAGCCCCATGAAACGAAATAGAAGCTCTACGGCAGGCAGTGAGGAAGATGATcatgatgaagaggaagaggagctacagaccaacaacaacaaaaaaagtgacAAACACAAAAAGCAGGAAGAGGCCTTCCTGACCAAATATATCCAGCGCCAGGGGGGTCGCTACAACTGTCGCCTGTGCGGCAAGCGCTCCAAGATGAAGGGCCATGCCATCTACCACGTGAGCTACAAGCACGACGTGCCCAAACCTTACTGCTGTAAAGAGTGTAGCAAGGCCTTCATACTAGAGTATTCGCTACTCAACCATATCTACCACAACCACAGACAGGGCATGTACCGCTGCCTCTTCTGCCCCTTCAGCTCTGACGTGGTGTGGGGCATAAAACGCCATGGCAACCGCTGCAATGCCCGAAgcggggaggagggggagggcagCAATGGAGAAGAGTGATTGGTTAATGGTTGCTAACACATACTTTACCTTGGTAATCAGGAGAAGGGACATTAACAGCCAGGCCTACATTATCTAGGTTCTAGAATCTCTTTGCATTGTGCATCTACTAGGCTAGTAACCCTAGGTACAGAAGATTCCACAGTCACAGAGGTGTAGATTCTCAGTGAAGTATGTATTTACTTCCTCTGTACACACAGTGATGAAGAATGATGTACTTTGTCATTCTGTTGACTTTTCCTGATATACGTCTGTGGAGCAGATGGACTCAAATGTAGAATATGTACTTTGTGAACTCGCAAACAGCCGTAATATGTACATGACAGCAGTTGATGACTCATAATGCTACACAATGAAACTATCAACtgacaaaacatgttttttgtgtATTTTTGACCTGCCTTTGTATTATCTTTATTACTTGGGATGTGTTTGTATCTTGGAAAACAATacaataaaaataatacaaattttAGGTACAATTTAGCGGACTTCTTCTGCCATAGAAGtcgagacacacacccacacctgcAGCACAGGAGGTGGGAAACCAACAGTTTGCATCCTGTGCTGCAGGTGTGTGTGATTTTGGGCTGTTCCTTACACCTCTCCACTGTGATTTCCTAAACTAACAACGACTTTTTGATGTGAGTAGGCTACAGCAGCATCTCATAACCCATTCTTGTATTTCATACTCTGAACAAAAACAAACGCCACATGTACAGTGTTCGGtttcatgtgctgaaataaaaaatctcagaaatgttccatatgcacaaaaagtgtatttctctcagattttgtgcacaaatttgtttacatccctgttagtgactaTTTCTCCTTTTGCCACGATTATCCATCCACCtcataggtgtggcatatcaagaa
>TU656723
GGAAGGTATCAGTGTAGATGTGCTGTCAAAAGACAGTAGTTATCCTCTCAGTGAGCCCAAggcagaagaggaggatgaggacaaAGGAGGAGCGAAGAAAGAGGAAGGTAGGAaaagaggactagaggagatggaggaaggcGAGGATAACGAAGAGGACTCCCGCTCAGCCGGCAGCCCCATGAAACGAAATAGAAGCTCTACGGCAGGCAGTGAGGAAGATGATcatgatgaagaggaagaggagctacagaccaacaacaacaaaaaaagtgacAAACACAAAAAGCAGGAAGAGGCCTTCCTGACCAAATATATCCAGCGCCAGGGGGGTCGCTACAACTGTCGCCTGTGCGGCAAGCGCTCCAAGATGAAGGGCCATGCCATCTACCACGTGAGCTACAAGCACGACGTGCCCAAACCTTACTGCTGTAAAGAGTGTAGCAAGGCCTTCATACTAGAGTATTCGCTACTCAACCATATCTACCACAACCACAGACAGGGCATGTACCGCTGCCTCTTC
>TU656724
GGAAAGGCTCCCGAGGAAAAACTGTTACATTATAGCAGATTTTTGCTATTTCATCAAATTATTCCGCAAAATGTAAACGAACAGCAATCAGGCATAGTCTATCTAGTCACGGAAATATGGAATGTGTGTTTCATTGGCTTTTTGAGAATTGATAGTGAGCTCCAGTCAATGGAAGCCGTGATGGAGGTTAAGGAGTCAGAGACAGCCATGGCGGGTTTTGAGGATTCAACGGAAGCCACAATAGACGTTAAGGAGTCAATTTCAGCCGCAATGGATGTGAAGGAGTCCATGTCAGCCATGATGGAAGTTAATGAGTCAGAGTCAAAAGAAGCCGTTGTGGACATTAAGGAGTCACAGGGAGCTGTTATGGAACTCAAGAGGCAGTCTTCCTCCTCTGGCGGCCAGGGGCGGGACAGAGACCGGGAGTCGGACAGCTATCTCCAGCACCTCCAGTGTCCCCACTGTCTGCTCCAGTGTAAGAGCCACTGCAGCTACCTCATCCACATCGCTAAGATCCATCCAAGCCGCCTGGATGACACGCCTGTGGGTCGCCTGGGCAACGCCATCTTCTACCAGCGCACGGCACGGCTGTTCCACTGCAGCTTGTGTTTCCACACGGCCAGGGAGTTCCCTCGCCTCTACGACCACCTGCTCACCTGCCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608498.2 False 2300 mRNA 0.47 2 12600012 12602688
TU656723 False 523 TUCP 0.51 1 12601005 12601527
TU656724 True 663 TUCP 0.51 2 12601599 12602638
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Neighbor

gene id symbol gene type direction distance location
LOC110527309 LOC106575526 coding downstream 826 12593033 ~ 12599186 (-)
LOC110528833 LOC106574707 coding downstream 114491 12474267 ~ 12485521 (-)
LOC110528827 LOC106574694 coding downstream 207712 12364103 ~ 12392300 (-)
LOC110528842 inh coding downstream 322593 12275646 ~ 12277419 (-)
LOC110528844 igfbp-2a coding downstream 395018 12187904 ~ 12204994 (-)
LOC110527312 LOC106575588 coding upstream 133054 12735742 ~ 12741080 (-)
LOC118965248 NA coding upstream 235638 12838326 ~ 12845168 (-)
LOC110527321 LOC106575579 coding upstream 285661 12887976 ~ 12892132 (-)
LOC110527324 LOC106574732 coding upstream 311370 12914058 ~ 12917593 (-)
LOC118965249 donson coding upstream 316060 12918748 ~ 12923179 (-)
G575791 NA non-coding downstream 29266 12569931 ~ 12570746 (-)
G575770 NA non-coding downstream 48281 12551268 ~ 12551731 (-)
G575750 NA non-coding downstream 77458 12522260 ~ 12522554 (-)
G575736 NA non-coding downstream 112756 12487023 ~ 12487256 (-)
G575735 NA non-coding downstream 113216 12486587 ~ 12486796 (-)
G575898 NA non-coding upstream 5096 12607784 ~ 12608291 (-)
G575907 NA non-coding upstream 16084 12618772 ~ 12619057 (-)
G575917 NA non-coding upstream 46811 12649499 ~ 12649744 (-)
G575933 NA non-coding upstream 67873 12670561 ~ 12671665 (-)
G575947 NA non-coding upstream 87559 12690247 ~ 12693726 (-)
G575727 NA other downstream 137471 12462116 ~ 12462541 (-)
G575725 NA other downstream 138960 12460629 ~ 12461052 (-)
G575666 NA other downstream 250273 12348646 ~ 12349739 (-)
G575511 NA other downstream 321119 12278576 ~ 12278893 (-)
G575380 NA other downstream 412652 12071431 ~ 12187360 (-)
LOC118965250 NA other upstream 327090 12927297 ~ 12933016 (-)
cu051 NA other upstream 486035 13088723 ~ 13092894 (-)
G576567 NA other upstream 624236 13226924 ~ 13233244 (-)
G576519 LOC106575469 other upstream 697848 13300536 ~ 13358009 (-)
G576667 NA other upstream 817001 13419689 ~ 13423705 (-)

Expression

LOC110527310(LOC106574666) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110527310(LOC106574666) Expression in each Bioproject

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LOC110527310(LOC106574666) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network