LOC110527312 (LOC106575588)


Basic Information

Item Value
gene id LOC110527312
gene name LOC106575588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12735742 ~ 12741080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608504.2
TACGTCATCCGCTGGGAAAGCGGAAACGGAAATAACTATTTGGCACATTGTTTGCAAATCTGCTGTGAGCAACAACGTTAATTAATTAACTTATTTACTTCCTAAAATGGCTCTTGAATCAAGAATCACACAAGAAGAGATACGAAAAATCCCTGAAAAGCCTATCGACCGAGAAAAGACTTGTCCTCTTCTGCTGCGGGTATTTACGACCAACGGTGGCAGGCATCACAGAGGGGACGAATTCGCACGAGGGCAAGTCCCTTCAAGTGAGCTGCAAATCTACACATGGATGGATGCCTCGCTAAAGGAGCTGACCAGCCTAGTGAAGGAGGTGTACCCTGATGCTCGGAAGAAAGGAACACACTTTGGTTTCGCCATCGTTTATCCTGAGCCCAAAAGAAATGGCTACAGAGTGAAAGACATCGGCAACACTGTGTCAGGCAGGAAGGGGGAAAATGACTCCATGACGCTACAGTCGCAGCGCTTCCAGATAGGAGACTACCTGGACATAGCCATCACACCACCCAACAGAGCCCCCCCACTTAACCCACGCATGGGCATGGGGAGGCCCTTCTGAACGCATCCACACCTGAACATAACCATCATATCACAAAACCCAAACCCACCTCTAAACATACATAAAGCCTTTCTgatcacactgactgactgaggagACTACCGTGACTTTCAATAGGGCCATCCTTCAGATTTGACTGTCCCCCACATACATGCTTTTTTTGGGCCTTTTTACCTTCTGATAGATCATATTTCAGACATGTATGTTACTTTTTTACCCTCGTCTCCCATCTTGGATAATGTGAAATAAAGTTGCCGTCTTACAATAAAA

Function

NR:

description
histone deacetylase complex subunit SAP18-like

GO: NA

KEGG:

id description
K14324 SAP18; histone deacetylase complex subunit SAP18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608504.2 True 847 mRNA 0.46 4 12735742 12741080
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527310 LOC106574666 coding downstream 133054 12600012 ~ 12602688 (-)
LOC110527309 LOC106575526 coding downstream 136556 12593033 ~ 12599186 (-)
LOC110528833 LOC106574707 coding downstream 250221 12474267 ~ 12485521 (-)
LOC110528827 LOC106574694 coding downstream 343442 12364103 ~ 12392300 (-)
LOC110528842 inh coding downstream 458323 12275646 ~ 12277419 (-)
LOC118965248 NA coding upstream 97246 12838326 ~ 12845168 (-)
LOC110527321 LOC106575579 coding upstream 147269 12887976 ~ 12892132 (-)
LOC110527324 LOC106574732 coding upstream 172978 12914058 ~ 12917593 (-)
LOC118965249 donson coding upstream 177668 12918748 ~ 12923179 (-)
LOC110527326 LOC106574394 coding upstream 184448 12925528 ~ 12972868 (-)
G575968 NA non-coding downstream 9346 12726107 ~ 12726396 (-)
G575964 NA non-coding downstream 14295 12721242 ~ 12721447 (-)
G575947 NA non-coding downstream 42016 12690247 ~ 12693726 (-)
G575933 NA non-coding downstream 64077 12670561 ~ 12671665 (-)
G575917 NA non-coding downstream 85998 12649499 ~ 12649744 (-)
G576339 NA non-coding upstream 809 12741889 ~ 12742185 (-)
G576346 NA non-coding upstream 9196 12750276 ~ 12750476 (-)
G576357 NA non-coding upstream 20381 12761461 ~ 12762123 (-)
G576349 NA non-coding upstream 52611 12793691 ~ 12794367 (-)
G576372 NA non-coding upstream 60782 12801862 ~ 12802266 (-)
G575727 NA other downstream 273201 12462116 ~ 12462541 (-)
G575725 NA other downstream 274690 12460629 ~ 12461052 (-)
G575666 NA other downstream 386003 12348646 ~ 12349739 (-)
G575511 NA other downstream 456849 12278576 ~ 12278893 (-)
LOC118965250 NA other upstream 188698 12927297 ~ 12933016 (-)
cu051 NA other upstream 347643 13088723 ~ 13092894 (-)
G576567 NA other upstream 485844 13226924 ~ 13233244 (-)
G576519 LOC106575469 other upstream 559456 13300536 ~ 13358009 (-)
G576667 NA other upstream 678609 13419689 ~ 13423705 (-)

Expression

LOC110527312(LOC106575588) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110527312(LOC106575588) Expression in each Bioproject

Bar chart with 21 bars.
LOC110527312(LOC106575588) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network