LOC110527313 (LOC106575531)


Basic Information

Item Value
gene id LOC110527313
gene name LOC106575531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12764809 ~ 12767812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527313
TTCAGGTGCGTCTCTGAGAGCGCTCAGAGCACATCAGTTCTAGTCAGCGGTAAATCAGTGGACTGCGTCTCACCCTAGACGGTCTCTCCCTGGAGCTCTGTTGGATCTGACTATGGCAGAGTGAACCAAGCAGAAGAAGTAGGGATACATGGAGCCTCCCTGACACTCAGGAGAGAAAAGGGTAGAGGTGTGTGTTCTGGGCCAGAGGAGCAGGAGAGATGACCTGGGGGACACTGTACGCCCAGCTGGCTGGTGTGAACCGCCACTCCACCAGCCTGGGGAAGGTGTGGctgtctgtcctcttcatcttccgTGTCACCGTGCTGGTCCTGGCGGCCGAAAGCGTCTGGGGGGACGAACAGAGTGACTTTGTCTGCAACACCCTGCAGCCGGGCTGTGAGAACGTCTGCTACGACCACTTCTTCCCCGTGTCCCACATCAGGCTCTGGTGTCTGCAGCTTGTCTTCGTCTCCACGCCTGCTCTCCTCGTCGCCATGTACGTGGCCTACCGTAATCACGGCGACAAACGCCAGGTCCTGCAGCAGGGTTCAGTCGGGGGGCGTTGCCGCAGCGACAAGGCCCAGGCAGCCCAGGAGGCTGAGCTAGAGAGTCTGAGGAGGCGGAGGCTGCCAATCACCGGGCCGTTGTGGTGGACGTACGCCTGTAGTCTGGTCTTCCGCCTGCTGTTCGAGGGAGGCTTCATGTATGCTCTGTACGTCTTGTACGACGGCTTCCAGATGCCCAGGCTGGTCCAGTGTGACCAGTGGCCCTGTCCCAACGTGGTGGACTGCTTTGTCTCCCGCCCCACGGAAAAAACTGTCTTCACCGTTTTCATGGCCGCCTCCTCCTGCGTCTGTATGGCTCTCAACATGGccgaactggcctacctggtcacCAAGGCTATCGCTCGGTGCCCGTCATCACGGCGCAGAGGGGGGAAACAGAAAGGGAAGGGTGCAAACTGTTCCTCAACCTCTTCCAAAGACAAGACTGCAGCAGAACAAGAAGAATGAGAAGTTGTTGTCGTCCTCTTCGTCTGGGTCCACCTGCAGCAAGGCGGTGTGAGGACGGGGGAGCTATAGACATAGCGTACATATGCACATACAGACGTGCAAAACatcagtagcctacagtacacacacaaacacactgaatcATAAATATGTGTAAACACTGTGTAGTCCACTCCAGACATGCACAGATCTCCTTCCCTGCTCAGTCACTGGAGTCACTacgccatctagtggccaatatTCACACATGGCCACTGACCCCTCAACAGGCgaagacaggccgacagacagacagacagacaaacagacagacagacagacattcagacagacagacagacagacagacagtttgtattgCTCCTATGGAATTGTGATGTTGGTAATGAAGAGATAACATTGTAAATACACTGACAATGGCATCCGCAGAACCACAGTAGAGTACTATGAGTAAAGGCTTATGCAATGACCTAcagaggatgtgtgtgtttt

Function

NR:

description
gap junction beta-2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527313 True 1505 mRNA 0.55 3 12764809 12767812

Neighbor

gene id symbol gene type direction distance location
LOC110527311 LOC106575461 coding upstream 71041 12620863 ~ 12693768 (+)
LOC110527308 fam171b coding upstream 170805 12585556 ~ 12594004 (+)
LOC110527093 NA coding upstream 196240 12568176 ~ 12568569 (+)
LOC110527307 LOC106575529 coding upstream 208303 12549201 ~ 12556506 (+)
LOC110528838 LOC106575524 coding upstream 244146 12487901 ~ 12520663 (+)
LOC110527314 LOC106599837 coding downstream 538 12768350 ~ 12774730 (+)
LOC110527315 LOC106574719 coding downstream 13571 12781383 ~ 12794388 (+)
LOC110527316 LOC106575583 coding downstream 40664 12808476 ~ 12814546 (+)
LOC110527318 LOC106575584 coding downstream 60785 12828597 ~ 12834338 (+)
LOC110527320 LOC106575532 coding downstream 76681 12844493 ~ 12850141 (+)
G575996 NA non-coding upstream 12455 12752020 ~ 12752354 (+)
G575995 NA non-coding upstream 12919 12751612 ~ 12751890 (+)
G575993 NA non-coding upstream 15086 12749414 ~ 12749723 (+)
G575990 NA non-coding upstream 19284 12745283 ~ 12745525 (+)
G575970 NA non-coding upstream 36998 12727547 ~ 12727811 (+)
G576005 NA non-coding downstream 10464 12778276 ~ 12778542 (+)
G576019 NA non-coding downstream 27460 12795272 ~ 12796046 (+)
G576015 NA non-coding downstream 28690 12796502 ~ 12798675 (+)
G576022 NA non-coding downstream 39355 12807167 ~ 12807430 (+)
G576034 NA non-coding downstream 58092 12825904 ~ 12827338 (+)
G575758 NA other upstream 222328 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 296058 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 929494 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1014654 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1266893 11496553 ~ 11498867 (+)
G576160 NA other downstream 404972 13172784 ~ 13173074 (+)
G576161 NA other downstream 405500 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 718704 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1347524 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1378258 14146070 ~ 14159585 (+)

Expression


Co-expression Network