LOC110527317 (LOC106590799)


Basic Information

Item Value
gene id LOC110527317
gene name LOC106590799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12856454 ~ 12863564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608509.2
TGTAAGGAGCACACCGTCCATCGTTGTTTACATATGTTATAGATTAGATCTGCTAGACCAAAGCAGACAGAAGTTTCAACATTTATTTGATCGCCAATATGTCCAAACTACAGTTGCTGAATGTGTTCGTCGCTGAGCGTTTATCCGCGGCTGCTGTGGAGATATTCGGGGCCGTAGAGAAGACCATTGCAGAGTTTCAGGAACTCATCTTATGTTCAGCAGAGGAGAACGAGCGTCTACGGAGGCTGTTGGCCATGGTTATCAAACCAGAGATAAAGTTACACAGAGTTGACTTCCAGCTACTCACTCCAGTCGTTCCCCCTGAGCAGCAGAACTGTGATCAGGAGTGGAGCCCCAGTCTGGGGCAGGATGACCCAGAACCCAcacagattaaagaggaacaACAGAAGCTCAGACTCAGTCAGGAGGACCCACCTCAGCCCTCACATCTTTACCAAAACCAAACTGTGGATGACGAAGAGAGGAGCGCTCTACCTATCATCATAACTGAGGAGATCAAAACAGATCCTGATGTAGAGGACTACAGAGTACCACAACCAACCAGTGATCAGCCCCTCTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAACTATATCAGTGTAAACAATGTGGCAACAGCTTCACACGTAAGGGACACTTGACCATCCATTCAAGGATACACACTGGGGAGAAACCTTATCAGTGCAAACAATGTGGTAGATGTTTCAATGTTATGAGTAACCTGAAACAGCAtatgagaatacacacaggacagAAATCTTATCAGTGCAAAGACTGTGGCAAATGTTTCAGTCGGAAGTGTGACTTGGACAGACACACAAGGATACACACAGGGGATAAATCTTTTCAGTGTGAAGACTGTGGCAACGCTTTCAACCAGAAGATAGAATTGACATTGCATATGAGAATTCATAGAGGACAGAGAACATACAGCTGTCCTGTATGCAAGAAAAGTTACATGGAATTAAGCCATTTAAGACGTCATCAGAGcgttcacacaggggagaaacttCATCAGTGCAAAGAATGTGACAAATGCTTTAGTTATAAAGGAAGCTTGAAGTTGCATATGAGCACTCACACAAACGGGATACATAATATCCCTGCAATGAGTGCAGCAAAAGCTTAAGCCTGAAGTGAATCTGAAGTGAAAACAACAAATTATACTTTATCATTGTGGATTTCTTGTTACATCCAACTTTAAATTAATGTTATATTTTCTGGCACTAGACAAAAATGAATTGAGTTGTGTGTGTGGACGAGGAAGTATCACTCAGTGTCATCTTTTTAAGATGAATCTAGCTCTCACTTTCAGGgacctaccctccaggacactgCTGGCTTCAGGATGTCCTCACCACTGTATCTAGCACAGAGCACACACTTGGATTTCTAAACAACAGGAGTTGTTATTCAATTGATTAACAATGACATACAGGATATCTTCTATCTGTACTGATGGCTGCATGTTAGCATATTGAAGTAGCCCATCACATCTGTATTGACTCAATACAGCAAATAAACTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608509.2 True 1551 mRNA 0.43 2 12856454 12863564

Neighbor

gene id symbol gene type direction distance location
LOC110527320 LOC106575532 coding upstream 6313 12844493 ~ 12850141 (+)
LOC110527318 LOC106575584 coding upstream 22116 12828597 ~ 12834338 (+)
LOC110527316 LOC106575583 coding upstream 41908 12808476 ~ 12814546 (+)
LOC110527315 LOC106574719 coding upstream 62066 12781383 ~ 12794388 (+)
LOC110527314 LOC106599837 coding upstream 81724 12768350 ~ 12774730 (+)
LOC110528756 LOC106575580 coding downstream 3229 12866793 ~ 12886786 (+)
LOC110527323 LOC106575578 coding downstream 29255 12892819 ~ 12900177 (+)
LOC110527322 LOC106574731 coding downstream 37035 12900599 ~ 12912321 (+)
LOC110527327 LOC106575575 coding downstream 191893 13055457 ~ 13058826 (+)
LOC110527329 LOC106574721 coding downstream 212416 13075980 ~ 13090351 (+)
G576040 NA non-coding upstream 18291 12837932 ~ 12838163 (+)
G576034 NA non-coding upstream 29116 12825904 ~ 12827338 (+)
G576022 NA non-coding upstream 49024 12807167 ~ 12807430 (+)
G576015 NA non-coding upstream 57779 12796502 ~ 12798675 (+)
G576019 NA non-coding upstream 60408 12795272 ~ 12796046 (+)
G576058 donson non-coding downstream 56347 12919911 ~ 12920331 (+)
G576076 NA non-coding downstream 91186 12954750 ~ 12955288 (+)
G576077 NA non-coding downstream 92689 12956253 ~ 12956519 (+)
G576078 NA non-coding downstream 93231 12956795 ~ 12957934 (+)
G576081 NA non-coding downstream 97591 12961155 ~ 12961376 (+)
G575758 NA other upstream 313973 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 387703 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1021139 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1106299 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1358538 11496553 ~ 11498867 (+)
G576160 NA other downstream 309220 13172784 ~ 13173074 (+)
G576161 NA other downstream 309748 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 622952 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1251772 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1282506 14146070 ~ 14159585 (+)

Expression


Co-expression Network