LOC110527323 (LOC106575578)


Basic Information

Item Value
gene id LOC110527323
gene name LOC106575578
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 12892819 ~ 12900177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608518.2
AATATCAGAGAGTACATGCCCCTTATCATCTTTATTGCTGCAGCTGCATACTTATTGACCAGTGAGTCTTTCCTTTCCTCAAATCACTTTCTGAGTCTCCAGACCTCCACCTGTTCACCATACAGGATGTTGACGTTTACGTTGTTGCTCCTGGCTTTGTCAAGTCTCCATGCTGCCCCACTGAGGGATGATGTAGTGGCACCCCCTAGAGGTAGGCTTCAGGATCGCAAGGTCCTGGTTCTGCCCTGGAGCGTCCCAGTGAGGGATCATGTTGTGTCATCCCCTAGAGGTAGACTTCAGGATCGCAAGGTCCTGGTTCTGCCCCGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCATCATGGACCTGAACACCGGCCTCGTCAAGGAACATATCAACGAGATGGACAGGAGAGTGGGACTAGtgtacGTTCCTCCCTCTGTGGATGAGTTCAGACAGGGAACCGAGAACTCCCAGAAGACTCTGGTGGACATCAGGAGCGGACGCATCATCAAACCTgtcggagagatggagagaagcatGATAATGACTCCTCAGGAGCCTATGGAGGTCCCAGTccggaggagagtgggaggatgGGTGAGGGCTGATGTTCTGCCTGGGAGTCTCCCAGTGGAGGAACGCAGACAGGGAACAGAGCCCTCCAGACGCTTCATCATGGACCTGAACACCGGCCTCGTCAAGGAACACGTCAGTGAGATGGACAGGAGAGTGGCACCAGtgtaCACTCCTTCCTCTGTGGATGAGTTTAGACAGGGAACCGAGAACTCCCAGAAAACTCTGATGGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACAGATACTTcaggatgagagagacagattccaAAaTGTGAGGCTGGTCGAGGCTGAGGTCCGGAGCATCCCAGTAGAGGAACGTAGACAGGGAACAGAGCCCTCCAGACGATTCATTATGAACCTGAACACCGGCCTAGTCAAGGAACACATCAGTGAGATGGACAGGAGAGTGGCACCAGtgtacACTCCTTCCTCTGTGGATGAGTTCAAACAGGGAACCGAGAACTCCCAGAAAACTCTGATGGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACTGACACCTCAGGaTGACAGGCTGGTGAGTGCTAAGGCTGAGACTCACtcagagaaagagtgtgttggtGAGGTCATCGATGGCCACTGCTATCAGTTCAACCCCACACTAATGACCTTCAGTGAGGCAGAGtCCTCCTGCAGCATTCTCTCCCCTCACGGACACCTGGCCTCCGTAACCAACGGCGACCTGCACTCCCGCCTGGTCTCTATGGTGATCAGGGCCACCAAGAGTCCCGTCCTCACCTGGCTGGGTGGAGTCGTGAAGGATAAGCAGTCAGAGTGGACCGACGGGTCCCCCTGGGGCTACAGTGATTGGATGCCCGGtcacccagacacacagacagacaagcaggctTGTCTGGAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTGGACTGTGAACTGAAGAGAGCTTCCATCTGCTCCTTCCCCATGGCAGCATAAGAGGCATGCACTAACTGTAGAATTAGAATAAGTAGAATGGACATTACAATGCACTATGAAAGGGACTTGTCACTCAATGGAAAGTTGTAACATACATAGAAGACAACAGAACCTGATGGAGGTCCCACACAATAGAGAAAACGCTGTTCATGTTTGGGTGCGTACTGTCTTTGCCTCTGTCTGTTATAAGCTGTCGGTGTAGTGAAGCACTTCGTTTATCTATGGGTAATCCCCCCCCCATTGGTAGTGATATCAGGTCTCACCAGTAACCAGTAACCAAGTGATGTCAACACATGAAGTGTTCTATTGAAGTGTTCTATTCTGTCACCATCTTGAGTGACATTAAAAAACatagattaaaaaatatatatatccattctACACATTCTGTTTCCATGCAGTAATCCTGTGAACCATAAACCATCTGCATCCTGTTTGTATTAAATTGTATGTCCTCCCTTCTTAAAATAAAAACGGAGCATTTTA

Function

NR:

description
uncharacterized protein LOC110527323 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608518.2 True 2127 mRNA 0.51 12 12892819 12900177

Neighbor

gene id symbol gene type direction distance location
LOC110528756 LOC106575580 coding upstream 6033 12866793 ~ 12886786 (+)
LOC110527317 LOC106590799 coding upstream 29255 12856454 ~ 12863564 (+)
LOC110527320 LOC106575532 coding upstream 42678 12844493 ~ 12850141 (+)
LOC110527318 LOC106575584 coding upstream 58481 12828597 ~ 12834338 (+)
LOC110527316 LOC106575583 coding upstream 78273 12808476 ~ 12814546 (+)
LOC110527322 LOC106574731 coding downstream 422 12900599 ~ 12912321 (+)
LOC110527327 LOC106575575 coding downstream 155280 13055457 ~ 13058826 (+)
LOC110527329 LOC106574721 coding downstream 175803 13075980 ~ 13090351 (+)
LOC100136184 LOC100136184 coding downstream 216976 13117153 ~ 13130917 (+)
LOC100136183 LOC100380633 coding downstream 235383 13135560 ~ 13149476 (+)
G576040 NA non-coding upstream 54656 12837932 ~ 12838163 (+)
G576034 NA non-coding upstream 65481 12825904 ~ 12827338 (+)
G576022 NA non-coding upstream 85389 12807167 ~ 12807430 (+)
G576015 NA non-coding upstream 94144 12796502 ~ 12798675 (+)
G576019 NA non-coding upstream 96773 12795272 ~ 12796046 (+)
G576058 donson non-coding downstream 19734 12919911 ~ 12920331 (+)
G576076 NA non-coding downstream 54573 12954750 ~ 12955288 (+)
G576077 NA non-coding downstream 56076 12956253 ~ 12956519 (+)
G576078 NA non-coding downstream 56618 12956795 ~ 12957934 (+)
G576081 NA non-coding downstream 60978 12961155 ~ 12961376 (+)
G575758 NA other upstream 350338 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 424068 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1057504 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1142664 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1394903 11496553 ~ 11498867 (+)
G576160 NA other downstream 272607 13172784 ~ 13173074 (+)
G576161 NA other downstream 273135 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 586339 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1215159 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1245893 14146070 ~ 14159585 (+)

Expression


Co-expression Network