LOC110527327 (LOC106575575)


Basic Information

Item Value
gene id LOC110527327
gene name LOC106575575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13055457 ~ 13058826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608525.2
GTTAGAAGCGACAAGAGCTAAATTTGCACACGcacctctgcacacacacactctcgacAAGCCTTCTTCACAGAGGCGCATCGCTGCTGAACGACAAGTGTGTGTACGACAAACAAGTTAGTGACTTCAGAGACAGAAATTAAGAAACAGACTTTGGACAAGAAGACTAACAGACACCCAAATGATTGGCTGAACACTGACCCCCAGGAGACATACATGTTCTCTCAACGTGCAGCTAAAGAAGACGACAGAGCTAACTCAGTTCTTTGAGACTAAAACGAGACCTTGTTGGTACCCGAAGACCTGAGCTTTAGAACCAGACCAGTACTTGTGGTTGAAGCCCAGAAGCTGTGGTCAGAATTGGTTCAGAAACGGTCAGAAGTTCCAGTAAGAAGGTGCAGTCATGCAGAAAGTATCTGTGGTCCTGTTGGTGGGAGTCCTGACGGTGCTGGTGACTCTGTGGGCTGGAGTGGACACAGCCCCCACCCTGCTGACTGACAGAGGAGACATAAAGCTAACAGGTCCAGCTAGAGTCGACTCAAATGTGCAAGAGAGAACGGAACCGTCAACGGTCAACGCTTCTAAAACACTGATGACCACCATCCCTGTTGGTCGAGAAAAGACATCCACACCCACCAGCAGTCTGGATAGACGATTGAAGATGGATCCGGTGACGAGCAGTCCAGATAGACGAGCCCAGATCCTGAAGATGCTGTCAGCGCTGGAGGAACTCAGCAGGGCGATCAACAGCACTCTGAGCACACGGATGACCATGATGCCCAGAGGGTCAGCAAACGGCAGAAATTCAGGAAAGAAGAAGAAAGCGGTAGCTGAGGTGGATAGAGTGAAAACCACCACAGTGCTTCCTGTGGATGTTGGAGGTAGCGTCACTGCATCCCGGCCCAGCACTGACGGCATAGACAGCCTGAGTGGCCGAAACTTCAAGAAGTCCCTCCCACAGCAACCCAAGAAGCCCAACAACAAGAGAGTGTGTTTCTGGAAGTACTGCTCCCAAAACTGATCCTCCACACGACCCTGACAAACACCCCTATAAACATCCATGGTACCCTCCAAACCAACATTCCCCCCACCCTGCACCCGGGCACTAGGCAACCAATGCGGCGAGGCATCGGATGCCTGGCGCCACCACTGACCTTTTCATTGGCTCATGAATAACAGTACTGACCAATCAGGTTGCCCCATCATCGACGTGTGTACTTGTGCCTATGTGCACGAAAGTCTGTTAACCGTTTATAGAAGAGAAAATGCTGTGTGTGATCTCTAATAAAGATGACCCGAGCATGATAAAACTATAGGACAATAAAGACACGTTTATTTTTCTacagatccctctctctctctctcgctctctcagttgTTCATTATGGAATGACCAATATGTCCAAAATAACCAAAATGACTGAAACTGTGTGCAGCTGGCTGCTAAAGATGATGTTGAGGGCAGATGTATTGCTGTTTTTTGAGGGGCTCACAAGATCATTTGAAAGGGTTCGAGGCATCATCGCAAAGCTGAGAGACTATTGTCTTAAAGGTTATGTACACATTGGTTGTATAATGTAATGTTACTGGACTGCTTACATTGGTGGTAGAGATTTACATAAGAGATTTACACACTTCTTGCAAAACTCTAGAATTCCTGGAGAGGATGTCCCCATGGTAACCCATGGTGGCACTGTAAACTACGTTTGTTGATATTAGGGCTTTTACGCTTTGGTTCCACAGAAGAGTCAGTTGTACCGTTGCCTTGGTGACTGTGGGTGACTGGGTTGAGGTTTAAAGGGAAAGTTCACCCCATATTCAAAAGTCTGTCAGTTGTCATACATCAAAAGATACACAAAGCAAGGTAACAAAAATATCAAAGACAAATCACTGT

Function

NR:

description
uncharacterized protein LOC110527327

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608525.2 True 1894 mRNA 0.47 4 13055457 13058826

Neighbor

gene id symbol gene type direction distance location
LOC110527322 LOC106574731 coding upstream 143136 12900599 ~ 12912321 (+)
LOC110527323 LOC106575578 coding upstream 155280 12892819 ~ 12900177 (+)
LOC110528756 LOC106575580 coding upstream 168671 12866793 ~ 12886786 (+)
LOC110527317 LOC106590799 coding upstream 191893 12856454 ~ 12863564 (+)
LOC110527320 LOC106575532 coding upstream 205316 12844493 ~ 12850141 (+)
LOC110527329 LOC106574721 coding downstream 17154 13075980 ~ 13090351 (+)
LOC100136184 LOC100136184 coding downstream 58327 13117153 ~ 13130917 (+)
LOC100136183 LOC100380633 coding downstream 76734 13135560 ~ 13149476 (+)
LOC110527332 LOC106575562 coding downstream 308803 13367629 ~ 13371986 (+)
LOC110527334 LOC106575514 coding downstream 312911 13371737 ~ 13421278 (+)
G576109 NA non-coding upstream 2273 13052860 ~ 13053184 (+)
G576107 NA non-coding upstream 5298 13049941 ~ 13050159 (+)
G576106 NA non-coding upstream 7652 13047581 ~ 13047805 (+)
G576097 NA non-coding upstream 16036 13037873 ~ 13039421 (+)
G576096 NA non-coding upstream 20726 13033319 ~ 13034731 (+)
G576173 NA non-coding downstream 132171 13190997 ~ 13212227 (+)
G576172 LOC106575469 non-coding downstream 141665 13200491 ~ 13358043 (+)
G576188 NA non-coding downstream 165636 13224462 ~ 13228182 (+)
G576171 NA non-coding downstream 274696 13333522 ~ 13336095 (+)
G576292 NA non-coding downstream 384947 13443773 ~ 13447070 (+)
G575758 NA other upstream 512976 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 586706 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1220142 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1305302 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1557541 11496553 ~ 11498867 (+)
G576160 NA other downstream 113958 13172784 ~ 13173074 (+)
G576161 NA other downstream 114486 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 427690 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1056510 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1087244 14146070 ~ 14159585 (+)

Expression


Co-expression Network