LOC110527329 (LOC106574721)


Basic Information

Item Value
gene id LOC110527329
gene name LOC106574721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13075980 ~ 13090351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608527.2
CATCAGCTGTTTTTCGTCCCCTTGACGTCATCTCCTTTATTTGATGTGCCACCAGCTCTATAACAGTACTTTCAGTTTTTAGTGAAATATGCATTTTGAATGTAATTTACTGAGAAATATTTGGTCATAAAACAACATAGCTACATTAGTTATTTAACTTTTGCTCATTAATTAATGACGAATCTAAGGAGCTTGCGATGAGATAGTAGCTAAGCGCTtctgctggctagctagctgaaaGCTAACGGAGGACCATAGTATATTTAGCTACAGTGACTGCTAGGTCCGAACTGCAAGTTGAAACAACTAACCTGGCGCGACTAGAACAAGTAAGATGCAGAAATCAGAGAAGAGCGATGGTGCTGAGGCAACGGTCGGTGTGCAGTTTACCGACCTTCCCAACGCCCTTATCGCATGCAAAGTAACTGAAGATGTTTTCAATGACCAAACTCTGAAGgCCAGTTTTGAGTCTCTGTTCCGCTCCTTCGACCCGGACGTGAACTTCCAGTTCTTTAAGAGTTTCCGGCGTGTGAGAATCAACTTCAGCGATGCACTGGCTGCCGCTGAGGCGCGGCTCCGACTGCACAAGAGCGACTTCAACGGCAAAGAGATGCGCCTCTACTTCGCACAGTCCGTCCTCATAGGCAGTCCCCGCCTGGAGCCCCCTAAACCAGACAAACAGTTCCTGATCTCCCCCCCAGCCTCGCCACCGGTGGGGTGGCAGCAGGCCCCGGACGCCGTGCCCGTCATCAACTATGACCTTCTCTGTGCCATCTCCAAACTAGGGccagGTGAGAAGTACGAGCTGCACACCggcacccccaccacccccagcGTAGTGGTCCACGTGTGTGAGAACGAGCAGGACAGCTCGGGGGGCGAAGACGACACAGAAGGAAGCACCAGCAGCAGCAACCGCCCCCCTCGCCCCAAAATCATCCAGACACGGCGTCCGGACATCACCCCCGGCGTCATGCAGTGAGCGGCAGAGAGAGGGGGCGCTCTAACATCCACAAAGCATGTCTCCCACATCTGCCTCTCAGAAGTCAATGACAACCTGGccctgggaggatgctgttgggACAAGTAAAACATCCTCTCTAACACTAGGGGGAGTCGCCTCTCAAAGCCCTGCCTtttcatggagagagagagagagaaaggaaaagagagcgagagacattcATCTCTTATCATTTCACATTTAATATCTCTTTCGTCCTCCATTTGGAACAATATTAGACacttgagagaaagagaagtagaCAGAGAATAAAGAGCAAGGGATGTTTTGAATATTTTTGctgtaaaaaaaaacgttttacttAATTTGCTTTGTAACCGTTGTATATGGTCAGGCatggtagtgagagagagatgttgtaGTCCTCTCTAGAGAGACACCGGGGGATCAACTTTCTTTGGATTCATTGTGATTTGTAATTCAGGACCCCGTAACAAACCCTGTCTATAGACTCATTTCCTACTGTGTACTGGATCCATCCTTTTCTTGTCTATAAGATGTGTGCGCATGCTGCAGTGGAGGCCGGCTCGTAATAATGGCTGAAAGGGCGCGAATGGAATGGCGTCAAactatgtttgataccattccacctattgcgctccagtcattaccacgagcccgtcctccccaattaaggtgccaccaacctcctgtggaatGCTGCCATCACTAGCTCAGCGATTTACAATGTTTGACTCATCAGGAGTACAAATTACATTCTATGTGATGACATCACAAACCTAATTATTATTCATGAATATTCTAATTCCTAATGGTCTTTACTCCAGGCCTAACATTTGTAAACAGAACACTTCAGAGTAACTTTCTTGGAATTCACTCCTTGACAGGTTAATTTGCTATGAAATGGACTTATTGTTCAATATGTCTCCAATAATGACTCATCTGCTTCCATAGCATTGAGATATGTTACTACAAACTCCCCTCCTAGTTCATCCTCCTTTGACAGAAATGGCTGCCATATCACGCTGATCACATGGGTCAGGGATGGCCTCCTGCATGGGTCTTCATAGCTTACTGTACATTTTTGCTGCACATCTTCCTGGCCAGTATGGCTGGTCTCACTTGACTTACACTGCTATTTTGGGGCTGACTGGGGGCCATTAGGGCTCTGAACTGCAGTTACTGTAGGAGGGTTGGTTGTGTGCGCtgctatcagagagagagagggggggggttcaTAGGTTGTAGTGGGAGGCTTGTGTAGATGcactgtgaaatgtttaatgcATGCGCCATCACAGCACATCTGGAATGAAGTTATCCACCCCAGCAGTTTAGTTGCATTAGTCATTTAGCTACTTTTGTACTCTGAACTATTGACATTCATTATTATACTTTGAATAATAATCTAGTGAGTTATCATGTAATAAAGACTTCACCACTAAA
>XM_021608528.2
GCCGGGAGTGAATGAACCATGGAACgaaggaagaaaagagagagagggaggggctgtGGTGTACGTCAGTAGTTGTGACTCTCATATAAGTGGCTGCAGAGAGAGCTGGAGACCAGACAGAAGGCTGTATTATATGAGACTTTTACAAATGCAGCCCATAGTCTCGTTGGAATGTTCTACAGCCTAGACGGAGGACTGTTTTCAGCTGTCGTGTAGctgcctgtctctgtcctacAGACCTCACTGCCAAGGGTGGAACCTGAGAGCTAACTCTGGATCTGGGCTAGCTGCTCAGTAGCTAACTGGTTCCGGCTTGAACGTCACTGGACATTTTGGCTCTTCGTTTGTCCAGGACTGCAGGCTTTTACAGCTCTCTTAGAGGGGTGTGGACtgtacaaacagagagagagagagagaagaggaggaagtaaGGGAAacaggaaaatatatatatatatattttttgttggaAAGAGATCTCCCTCAACCCTCACGCTGGGGAAGGCGGCGCAACCCCCCCACACCTGTCATCTTCATCCCGGCCCCTCCTCACAAACTCTGACCTCCCGCATTATCAGGTGGAAAGGCCTCTGCCTCCCTGCCCTTCCCATCATGCACCTCAAGACCACCAAGTGTAACGCCTTCTGCCTGGTTGCCTCGGTGACCAACCAGGAAGTGTTTGACAGGCCTGAGTCCCGGgCCAGTTTTGAGTCTCTGTTCCGCTCCTTCGACCCGGACGTGAACTTCCAGTTCTTTAAGAGTTTCCGGCGTGTGAGAATCAACTTCAGCGATGCACTGGCTGCCGCTGAGGCGCGGCTCCGACTGCACAAGAGCGACTTCAACGGCAAAGAGATGCGCCTCTACTTCGCACAGTCCGTCCTCATAGGCAGTCCCCGCCTGGAGCCCCCTAAACCAGACAAACAGTTCCTGATCTCCCCCCCAGCCTCGCCACCGGTGGGGTGGCAGCAGGCCCCGGACGCCGTGCCCGTCATCAACTATGACCTTCTCTGTGCCATCTCCAAACTAGGGccagGTGAGAAGTACGAGCTGCACACCggcacccccaccacccccagcGTAGTGGTCCACGTGTGTGAGAACGAGCAGGACAGCTCGGGGGGCGAAGACGACACAGAAGGAAGCACCAGCAGCAGCAACCGCCCCCCTCGCCCCAAAATCATCCAGACACGGCGTCCGGACATCACCCCCGGCGTCATGCAGTGAGCGGCAGAGAGAGGGGGCGCTCTAACATCCACAAAGCATGTCTCCCACATCTGCCTCTCAGAAGTCAATGACAACCTGGccctgggaggatgctgttgggACAAGTAAAACATCCTCTCTAACACTAGGGGGAGTCGCCTCTCAAAGCCCTGCCTtttcatggagagagagagagagaaaggaaaagagagcgagagacattcATCTCTTATCATTTCACATTTAATATCTCTTTCGTCCTCCATTTGGAACAATATTAGACacttgagagaaagagaagtagaCAGAGAATAAAGAGCAAGGGATGTTTTGAATATTTTTGctgtaaaaaaaaacgttttacttAATTTGCTTTGTAACCGTTGTATATGGTCAGGCatggtagtgagagagagatgttgtaGTCCTCTCTAGAGAGACACCGGGGGATCAACTTTCTTTGGATTCATTGTGATTTGTAATTCAGGACCCCGTAACAAACCCTGTCTATAGACTCATTTCCTACTGTGTACTGGATCCATCCTTTTCTTGTCTATAAGATGTGTGCGCATGCTGCAGTGGAGGCCGGCTCGTAATAATGGCTGAAAGGGCGCGAATGGAATGGCGTCAAactatgtttgataccattccacctattgcgctccagtcattaccacgagcccgtcctccccaattaaggtgccaccaacctcctgtggaatGCTGCCATCACTAGCTCAGCGATTTACAATGTTTGACTCATCAGGAGTACAAATTACATTCTATGTGATGACATCACAAACCTAATTATTATTCATGAATATTCTAATTCCTAATGGTCTTTACTCCAGGCCTAACATTTGTAAACAGAACACTTCAGAGTAACTTTCTTGGAATTCACTCCTTGACAGGTTAATTTGCTATGAAATGGACTTATTGTTCAATATGTCTCCAATAATGACTCATCTGCTTCCATAGCATTGAGATATGTTACTACAAACTCCCCTCCTAGTTCATCCTCCTTTGACAGAAATGGCTGCCATATCACGCTGATCACATGGGTCAGGGATGGCCTCCTGCATGGGTCTTCATAGCTTACTGTACATTTTTGCTGCACATCTTCCTGGCCAGTATGGCTGGTCTCACTTGACTTACACTGCTATTTTGGGGCTGACTGGGGGCCATTAGGGCTCTGAACTGCAGTTACTGTAGGAGGGTTGGTTGTGTGCGCtgctatcagagagagagagggggggggttcaTAGGTTGTAGTGGGAGGCTTGTGTAGATGcactgtgaaatgtttaatgcATGCGCCATCACAGCACATCTGGAATGAAGTTATCCACCCCAGCAGTTTAGTTGCATTAGTCATTTAGCTACTTTTGTACTCTGAACTATTGACATTCATTATTATACTTTGAATAATAATCTAGTGAGTTATCATGTAATAAAGACTTCACCACTAAA

Function

NR:

description
calcipressin-1-like isoform X2

GO: NA

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608527.2 False 2431 mRNA 0.47 4 13075980 13090351
XM_021608528.2 True 2673 mRNA 0.49 4 13085246 13090351

Neighbor

gene id symbol gene type direction distance location
LOC110527327 LOC106575575 coding upstream 17154 13055457 ~ 13058826 (+)
LOC110527322 LOC106574731 coding upstream 163659 12900599 ~ 12912321 (+)
LOC110527323 LOC106575578 coding upstream 175803 12892819 ~ 12900177 (+)
LOC110528756 LOC106575580 coding upstream 189194 12866793 ~ 12886786 (+)
LOC110527317 LOC106590799 coding upstream 212416 12856454 ~ 12863564 (+)
LOC100136184 LOC100136184 coding downstream 26802 13117153 ~ 13130917 (+)
LOC100136183 LOC100380633 coding downstream 45209 13135560 ~ 13149476 (+)
LOC110527332 LOC106575562 coding downstream 277278 13367629 ~ 13371986 (+)
LOC110527334 LOC106575514 coding downstream 281386 13371737 ~ 13421278 (+)
LOC110527335 LOC106575499 coding downstream 340172 13430523 ~ 13443490 (+)
G576109 NA non-coding upstream 22796 13052860 ~ 13053184 (+)
G576107 NA non-coding upstream 25821 13049941 ~ 13050159 (+)
G576106 NA non-coding upstream 28175 13047581 ~ 13047805 (+)
G576097 NA non-coding upstream 36559 13037873 ~ 13039421 (+)
G576096 NA non-coding upstream 41249 13033319 ~ 13034731 (+)
G576173 NA non-coding downstream 100646 13190997 ~ 13212227 (+)
G576172 LOC106575469 non-coding downstream 110140 13200491 ~ 13358043 (+)
G576188 NA non-coding downstream 134111 13224462 ~ 13228182 (+)
G576171 NA non-coding downstream 243171 13333522 ~ 13336095 (+)
G576292 NA non-coding downstream 353422 13443773 ~ 13447070 (+)
G575758 NA other upstream 533499 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 607229 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1240665 11826502 ~ 11836170 (+)
LOC110495474 LOC106573985 other upstream 1325825 11743954 ~ 11750311 (+)
LOC118965246 LOC106574739 other upstream 1578064 11496553 ~ 11498867 (+)
G576160 NA other downstream 82433 13172784 ~ 13173074 (+)
G576161 NA other downstream 82961 13173312 ~ 13207489 (+)
G576241 LOC106575516 other downstream 396165 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 1024985 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 1055719 14146070 ~ 14159585 (+)

Expression


Co-expression Network